Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02958 ATGAAGAGAGGCAGAGAAAAGAAGGTAGCTGCCGCTAAACACGGCCTTGTTCCTAAAAATGCTATCGGAATTCCAGAACGTAACCAAGATGGCTTCCCCTCTGATCTCAACCATGACCAAGaCGATTTGTACGATGAACTGTGGCGTGCATGCGCCGGCCCCTCTGTTTATGTTCCGCGTGCCGGCGAAAAGGTCTTTTACTTCCCTCAAGGTCACTTGGAACAGGTTGCTGCCTTTGCTGATCAGCGAGAGGGTCACATGGAAATGCCTGTATATGATTTGCCTTCTAAGATCCTCTGCAGGGTGATGAGTGTTCAGCTCAAGGCAGAAGCTTACGCAGATGAGGTTTTTGCACAAATTACTTTGCTTCCATTGCTAGAGCAAGATGAACTTAGATCAGAGGACAAAGATACTTGTCGGCTACCCTGCAGAGCTGCTTTTTGCTCCTTTAGTAAGACACTCACTCCATCGGACACAAGTACACATGGTGGATTCTCTATTCCTAAGAGACATGCTGACGAATGCTTCCCTCCTCTGGATATGTCTCAACAACCACCATCACAAGAGCTAATTGCAAAGGACTTGCATGGCTTTAAGTGGCATTTTCGCCATATATTTCGTGGTCACCCAAAACGGCACTTGCTTACTAGTGGTTGGAGCACATTTGTGAATTCAAAAAGGCTTGTTGCAGGAGATGCATGCATTTTTCTCAGTGGGGAAAATGGAGAACTTCGTATTGGGATCCGTCGAGCAACGAAACATCACAAGAGTGCATCGATACCCGCATCTGTGATATCTGGCCATAGCATGCAACTTGGAATATTGGCCAGTGCTTCCCATGCTGTTGCCACAGGATCTATGTTCACTGTGTATTACCATCCTTGGACAAATCCCTCTGAGTTCATTATTCCACTGGATCAATACATGAAGTCAAGTGCAGTGAACTACTCAGTTGGAACGAGAGTACAAATACATCGTGGAGCTGAAGAATTTAGTAAAAGGAGATATGCTGGTACCGTTGTTGGTGTTGGAGATATTGACAGCACTAGATGGCCTGATTCACAATGGAGATGTCTCAAGGTGCAATGGGATGGCATACTGGACACATATGTGCATCCTGAACGAGTTTGTCCTTGGAGCATTGAACCCTTGGGATCCGCCAAGAAGAAACACGTTCCAATTCTTCCCCTACCAAAGAGTGTACTTCATCCATTGTTGCCGGGATGTGGTTTTGACAAGGAGGACATAATTCAGAATCTGGTCAAGCATGCAACTCAGAGATTCGAAAGGGGCTTACAAGGTCAAGATTACAATGAAGAAGGTTCTTCACAGCATCCACATCCACCACCATTGTCAACCAATGTACTTCTCCCATCAAACGTCACCCCTAGTGACTCACAGTTGGGGATGGAGAGTCAGCTGCAGTTTGTAACGCAAAACCCTTCCCACCAATCTCTTGGCAGCTCAATATCATTTCCAGATGATAACATATCAACTTCAAGCCTCCCCATTCGCCCCCCAATCTTCACCACTTGTGTAACATGTAATAATGTCTCAATCAAGAGAGATGTTTCAACAAATGTGAACTCCAGTGATTCTGAATCCCAGGGATGGCGTGCTTCTGAACCTAGAGATGAGAATGAAGTTCATTTTGGTCATCCTCATGGATACAATAGATACAAGCTTTTCGGGTTCAACTTAATTGATAACAACCCGGAGCTCCCTTCACCACAAGTTGCTGCTTTTAGCAAGATTTCAAGTCCCCCGTCTGTTGTTACTCCAATGTCCCAGTCAAGTGTTTCTGCAACTATCCCGGCATCAGAACCATCCAAGAGTATTTCAGGTGTTACCTcggagaaagaaaacaagaaatggTGCTCTGTTAATAGTAGGAGTTGCACAATGGTGCTTAAGCATGGAACTGCACGTGGAAGATCAATTGACCTCACAAGTTTTCCTGGATATGATGAACTCATTTCTGAACTTGATCGGATGTTTGATTTTAGAGGAAGCTTGAAAAACGGAAGCAGTGGATGGCAAGTGACATACACAGATGATGATGGGGATATGATGCTGTTAGGAGATTACCCATGGCAGTTGAGTAATGAATCAAACAATACTATGAAAACAAGATTCTTTGGCCCATTATTTAGATCTTTGTG 2162 0.4417 MKRGREKKVAAAKHGLVPKNAIGIPERNQDGFPSDLNHDQDDLYDELWRACAGPSVYVPRAGEKVFYFPQGHLEQVAAFADQREGHMEMPVYDLPSKILCRVMSVQLKAEAYADEVFAQITLLPLLEQDELRSEDKDTCRLPCRAAFCSFSKTLTPSDTSTHGGFSIPKRHADECFPPLDMSQQPPSQELIAKDLHGFKWHFRHIFRGHPKRHLLTSGWSTFVNSKRLVAGDACIFLSGENGELRIGIRRATKHHKSASIPASVISGHSMQLGILASASHAVATGSMFTVYYHPWTNPSEFIIPLDQYMKSSAVNYSVGTRVQIHRGAEEFSKRRYAGTVVGVGDIDSTRWPDSQWRCLKVQWDGILDTYVHPERVCPWSIEPLGSAKKKHVPILPLPKSVLHPLLPGCGFDKEDIIQNLVKHATQRFERGLQGQDYNEEGSSQHPHPPPLSTNVLLPSNVTPSDSQLGMESQLQFVTQNPSHQSLGSSISFPDDNISTSSLPIRPPIFTTCVTCNNVSIKRDVSTNVNSSDSESQGWRASEPRDENEVHFGHPHGYNRYKLFGFNLIDNNPELPSPQVAAFSKISSPPSVVTPMSQSSVSATIPASEPSKSISGVTSEKENKKWCSVNSRSCTMVLKHGTARGRSIDLTSFPGYDELISELDRMFDFRGSLKNGSSGWQVTYTDDDGDMMLLGDYPWQLSNESNNTMKTRFFGPLFRSL 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02958 720 CDD B3_DNA 149 250 IPR003340 GO:0003677
Bva04g02958 720 Pfam Auxin response factor 278 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva04g02958 720 Pfam AUX/IAA family 628 702 IPR033389 -
Bva04g02958 720 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Bva04g02958 720 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 699 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva04g02958 720 MobiDBLite consensus disorder prediction 526 552 - -
Bva04g02958 720 MobiDBLite consensus disorder prediction 538 552 - -
Bva04g02958 720 SUPERFAMILY DNA-binding pseudobarrel domain 147 281 IPR015300 -
Bva04g02958 720 PANTHER AUXIN RESPONSE FACTOR 37 699 - -
Bva04g02958 720 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Bva04g02958 720 Gene3D - 626 710 - -
Bva04g02958 720 SUPERFAMILY CAD & PB1 domains 638 706 - -
Bva04g02958 720 Gene3D - 148 252 IPR015300 -
Bva04g02958 720 Gene3D - 315 390 - -
Bva04g02958 720 SMART B3_2 150 252 IPR003340 GO:0003677
Bva04g02958 720 ProSiteProfiles PB1 domain profile. 631 720 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02958 Bva-Chr4 24923991 24929716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02958 629 699 B3 DNA Binding Superfamily AT5G62000 54.930 1.17e-19 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva04g02958 AUX_IAA 1.7e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02958 - - lja:Lj1g3v4764520.2 778.089