Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02903 ATGGCTGAACTGCCAAATAGCAGGCTCCAAAGCATGTTGCAGGCTGCGGTGCAATCCGTTCAGTGGACTTATAGCCTCTTCTGGCAATTTTGTCCTCAACAAGGgaTTCTGGTTTGGGCTGATGGTTACTACAATGGAGCAATTAAGACAAGGAAGACAGTGCAACCAATGGAGGTTAGTGCCGACGAGGCGTCTCTCCAAAGAAGCCAGCAACTTAGAGATCTTTATGAGACATTGTCTGCCGGAGAGACAAACCTGCCGGCACGACGGCCCTCCGCCGCCTTGTCACCGGAGGACCTAACCGAGTCTGAATGGTTCTATCTGATGTGTGTCTCATTCTCCTTTCCTTCTGGTGTCGGGTTGCCGGGAAAGGCGTATGCGAGGAGGCAGCATATATGGTTGGCTGGGGCAAACGAGTTGGACAGCAAAGTGTTTTCAAGGGCTATTCTTGCCAAGAGTGCTGGTATACAGaCCGTGGTATGCATTCCTCTATTGGACGGCGTCGTTGAACTCGGCTCCACAGATAAGATTCAAGAAGACCTTAATTTTATCCAACATATCAAGACTTTCTTCGCCGACCACCACCAACATCAACAGCCTCACCCTCCGCCTCCGAAGCCCGCTCTCTCGGAGCACTCCACCTCCAACCCCAACCACTCCCGCTTCCACTCACCTCCCATTCCAGCCACCTTGTATCACGAAGTGGCAGACCCACCTCCGCCAGCAGCAAGTCCCACCGCCATTAATCCTAACCACGACGGCATGGATGAAGacgaggaggaggaggaggaggaggaagaagaagctgaCTCTGACTCCGAAGCAGAGACAGTCCGTAACACGGCAGCAGCCGCAGAACCAAGCGAGCTAATGCAGTTAGAAATGTCCGAGGATATTCGGGTCGGGTCACCGGATGATGGGTCGAACAACTTGGACTCAGATTTTCATATGTTAGCGGTGGGCCAGAGTGAGTCACTAGACCATCAGCGGCGAGCTGACTCGTACATGGCCGAGTCAACCCGGAGATGGACGTCGGTGCAACTGCAAGAGCCAGTGCCACTCCTTTCCTCGGGGCTTCAGATTCAATTACCAGTTTCAGTGGCTGAGGACTTGACTCAAGAGGACACCCACTATTCTCAAACGGTTTCCGCCATCCTTCAAAACCAGTCTACGCGGTGGGCAGAATCACCCACGGAGGGCTACTGCTCCTCCCAATCAGCTTTCGCCAAGTGGAACACCCACGCTGACCACAATCTTCACGTCTCGACTGATGGCACGTCCCAATGGCTCCTCAAGTACATTCTGTTCAGCGTCCCATTCCTCCACATCAAGTACCGTGACGATAACTCGCCTAGGTCCGGCGATGCCGCAGCCCGGTTGCGGGGGAAGGGAATGCCGCAAGATGAGCTCAGCGCCAACCACGTGCTCGCCGAGCGCCGCCGTCGCGAGAAGCTCAACGAGAGGTTCATCATTTTAAGATCGCTAGTCCCCTTcgtgaccaaaatggataaggCCTCTATATTAGGGGACACCATCGAGTACGTGAAACAGTTGCGGAAAAGGATACAGGATCTCGAGGCACGTAACAGCCAGATGGAGTCCGATCAACGGTCCAGATCAGGGGAGCTACAACGGACGACTAGTTCAAAAGAACAAAGGAGCGGGGTCACGGTAATGGATCAAGCCCGGGACAGCGCAACCGGGTCAGATAAGAAGAAGTTGAGGACCGGGGAAGCAATGACGAAATCGCCAACGCCCTCTCCTTTGGCGGCGGAGGGAGCGACGTCGGTGCAGGTGTCGATCATTGAGAGGAACGCGTTGTTGGAGTTGGAGTGCCCGCAGAGGGAAGGATTGTTACTAGACGTGATGCAAGCGTTGCGGGAGATGAGGATTGAGGTGACGACGGTGCAGTCGTCGTTGAACGGCATGATGTTTGTGGCGGAGTTGAGGGCTAAGGTGAAGGAGCATGCGAACGGAGGCAAGAAGGTGAGCATTGTGGAAGTGAAGAGAGCcctaaatcaaattataccCCATACTGACTA 2042 0.523 MAELPNSRLQSMLQAAVQSVQWTYSLFWQFCPQQGILVWADGYYNGAIKTRKTVQPMEVSADEASLQRSQQLRDLYETLSAGETNLPARRPSAALSPEDLTESEWFYLMCVSFSFPSGVGLPGKAYARRQHIWLAGANELDSKVFSRAILAKSAGIQTVVCIPLLDGVVELGSTDKIQEDLNFIQHIKTFFADHHQHQQPHPPPPKPALSEHSTSNPNHSRFHSPPIPATLYHEVADPPPPAASPTAINPNHDGMDEDEEEEEEEEEEADSDSEAETVRNTAAAAEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHMLAVGQSESLDHQRRADSYMAESTRRWTSVQLQEPVPLLSSGLQIQLPVSVAEDLTQEDTHYSQTVSAILQNQSTRWAESPTEGYCSSQSAFAKWNTHADHNLHVSTDGTSQWLLKYILFSVPFLHIKYRDDNSPRSGDAAARLRGKGMPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKRIQDLEARNSQMESDQRSRSGELQRTTSSKEQRSGVTVMDQARDSATGSDKKKLRTGEAMTKSPTPSPLAAEGATSVQVSIIERNALLELECPQREGLLLDVMQALREMRIEVTTVQSSLNGMMFVAELRAKVKEHANGGKKVSIVEVKRALNQIIPHTD 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02903 680 Gene3D - 470 541 IPR036638 GO:0046983
Bva04g02903 680 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Bva04g02903 680 SMART finulus 475 524 IPR011598 GO:0046983
Bva04g02903 680 MobiDBLite consensus disorder prediction 254 273 - -
Bva04g02903 680 PANTHER TRANSCRIPTION FACTOR TT8 8 678 - -
Bva04g02903 680 Coils Coil 255 275 - -
Bva04g02903 680 MobiDBLite consensus disorder prediction 547 564 - -
Bva04g02903 680 Coils Coil 508 535 - -
Bva04g02903 680 Pfam Helix-loop-helix DNA-binding domain 472 519 IPR011598 GO:0046983
Bva04g02903 680 MobiDBLite consensus disorder prediction 194 291 - -
Bva04g02903 680 MobiDBLite consensus disorder prediction 232 246 - -
Bva04g02903 680 MobiDBLite consensus disorder prediction 526 546 - -
Bva04g02903 680 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 471 536 IPR036638 GO:0046983
Bva04g02903 680 MobiDBLite consensus disorder prediction 526 593 - -
Bva04g02903 680 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Bva04g02903 680 PANTHER TRANSCRIPTION FACTOR TT8 8 678 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02903 Bva-Chr4 24668228 24673252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02903 370 678 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 40.968 6.45e-57 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g02903 bHLH-MYC_N 1.1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02903 - - pvy:116122009 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02903 04 24668228 24673252 Bva13g02845 13 20649286 20654921 BWGD