Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02875 ATGAGAGACGCGTTGAGATCTCCGAAGCGATTGGGGAAGCCGGAGGATGACATGGTTTCAGAAGGGGGAGTAGTTGAAACAAAAAGGGATGACACAGGTCAACAGCCTTCAAATTTGACTGGTGAGGTTTTGGTGCATGAAAGAGAGACTTCCAACTTGATAGATGTAAAGGAGGAAATGGAGGTAGTAGTAAATGAAGAATCTGCCTTAGATTTGGACACGGGTACGGGTAGAGGTATTGGGGTAGATGAGAATAGGAACAAAAGAAGGAGGTTAAGTTCCGGGGATGCCATTGAAGAAGCTGGTACTGAGATGAcggagaagaagaaacaaggtTTAAATGGTAAAGTGCAGATAGGTGGTCGAGTGTTGCGGTCAATGTTAAAGAGAGAAGATGATAAGAAAACTGGGAATGGTGAGAACAATGGTGTGGTGGTAGGCGAAAGTAGAGATTCTGATGGGTTTAAGAAGATAACAGTTAAGGAAGAAGCTGATGAATTTGCTAGTGCTGGCTATCAGAAGGAAGATGATAAGTTGAGAATTAATGACAatgatgaaaagaaatcaaaacgGAAACGAGGGAGACCACCCAAAGTGGAGATGAAAGAGCAAGATCAATTAGTTGGTGAAATGCATGGCAAGCATGGAAGGCCCCCAAAAATGGAGATAAAAGAGGAATATCAATCAGTTGGTAAGTTGCCTCGCAAGCGTGGAAGGCCCcccaaaatggagaaaaaagagCAAGATCACTCAGTTGGTGAGTTGCATCAGAAGCGTGGAAGGTCCCCCAAAATGGAGATGAAAGAGCAAGATCAATCTGTTGCTGAGTTGCATCGCAAGCGCGGAAGGCCCCCCAAAATGGAGATAGAAGTGCAAAATCAATTTGCTGCTGAGTTGCATCGCAAGCGTGGAAGGCCCCCCAAAATGGAGATGGAAGAGAAAGACCAACCAGTTGGGCTTCGGAAGCGTGGAAGGCCCCCCAAAGCTGggctaaaatataatatcttcAAAGTGGCACAtcatagaaaaggaaaggtgGGTTTTGGAAGACGTAAGAAACCTTTAAAAATGAGAGATGATGATGTGTgctcaaaaaataattctggTAAAGAGTTGAAGAGCAGGAGATTTTCTACTGTCAAGAAGAGTATATTTGGGAAGACTTTGGAAACTAAGAGCAATGAGGTTGCATCGCCATTGAGATCAAATTTTGTGGAGGGACCTGTTGCAGAGAAAAACGGAAAGAGTCAGGAAAAACAGTTTGTGAGGGACAAAATAAAGGAATTGCTCTTTGCTGCGGGCTGGGAAGTTGACTATAGACCTAGGAATGGCAAAGAGTATAACGATGCTGTATATGTTAGTTTAGATAAAAAGACTCACTGGTCCATTACACTGGCCTACAATAGGCTTAAAATGCACTATGAAGCTGGTGACGGTGAAGATAAAGTATACAGGGCAGGTTTCAAATTTACACCAATACCGCAGGAGGAATTCAATATACTGACTAAAgtaattaacaagaaaagagaaagtaaaCAGGAACTGAAGCAAAAAGGGAAAGATGAGGGAAAGATGGGTAAGTCaatgaagggaaaaaagaaaaggagatgtTCACTTCTTGAAGAGGATGATCGACACATTACATCCACTAAAGGGAAGCTGCTTCTGGTGAAGGATGACAAGCgattgaaaacaaaaagcaaGAAGAGATTTGCTCCTTTGGTTCGCAACGCTGAGAAGGAGTCAGATTCTGAAGATGATGGATATATACCATATGATGGAAAACGAACTGTACTGGCTTGGATGATTGATCTGGGAACAGTCTTGCAAAATGCAAAGGTTTATTATATGAAGCGTAGAACGAAATCTAAGGTGGAGGGTAGGATTATGGGAGATGGCATTCACTGTGACTGTTGTAAGGAAATAGTAACAGTTTCAGAATTTGAAGTACATGCAGGAAGCAAACTTTGTGatccatttaaaaatatatatacagaggGAGGGACTTCCCTATTGCAATGCCTACTAGATTCATGGAATAAGCAAGATGAATCTGAACTCAAAGGTTTCCATTCCATTGATGTTGCCGGTGAAGATCCTAATGATGATACATGCGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTCCATCAAAGCTGCTTGGATATCAGTAAATTCCCATCAGGTGACTGGCATTGCATTTATTGCTGTTGCACATTTTGTGGGTTGTTTGGTCGAAGTACAGACCAAAATAATAGCTGTGATGATATCACTGCAGAGGCACTACTTACATGCTGTTTATGCGAGGAAAAATATCATAGGTCCTGTATTGAGGCGAACTGTGTGAAGACTGATGATTCCAGTGATGCGTCCTTCTGTGGGAAGAGATGTCAAGAGTTGTCTCAGAGACTTGAAATGCTTTTTGGGGTTAAACATGAAATTGAAGATGGTTTCTCTTGGACTTTCATTCGCCAGTCAGATGTTGGCTCTGATGCTTCTCAGCTAAAACCTGAGATGGTTGAATGCAATTCCAAACTAGCTGTTGCATTATCGGTAATGGATGAGTGCTTCAAGCCTTATATTGATCATAGAAGTGGGATTAATCTGATCCACAGTATTCTTTATAATCGTGGTTCAAACTTTAAACGCCTAAACTATGGTGGATTTTTTACTGCAATTCTAGAGAGAGGTGACGAGATCATCTGTGCTGCATCTATCAGGATTCATGGGAATGAACTAGCAGAGATGCCATTTATCGGGACTCGTCACATGTATAGGAGACAGGGAATGTGCCGCAGGCTTCTGAATGCCATTGAATCGGCACTCAGTTCGCTGAACGTCGAGTTGTTGGTCATACCAGCAATCTCAGAAATGAGGAATACTTGGACTTCAGTTTTTGGGTTTGAACCActaaaagtgaaaaacaaacgaaaaataaagaacatgAGTCTGTTGGTATTCCCTCATGTAGATATGTTACAGAAGAATATCACAGAGCAGCATCAATTTGCTGATGAAAATATGATTCCTACTGAAGTTTCCTGTCTTCAACGTCAGAAGAACCCAACAGTGCATGAAGTAGTAAGTAAATGTGATGTCGAAGGCTCATCAGGATCTGATGGGGTCCTTGGTTCGAGTGCATGCCAGGTAAATGAAACCATGTCTACTGAATTTGGTTCTCCCCGTGATAATGTCAGTGATGATGCTCATAACCAAGCTGAAGAGATAAAAACATACCAGAATGCTGATTCCAGTTGCATAGTCCTAGCACATGATGAGAAGACAGTAGATTTGGACACCCCATTGAATACTTGCGGTGATTCTAAGGAGGAGAGGCAGTGTCTCTCAATGTCCCGTATTAGCACTGAAGGTACCCAAGAAGGACGTTGTGGCAGTGGTTTCTCGCAGGGAACTGAAAATATGCACAGTGAGGGGATATTAACCGATGAAATTGTCACAAACAACAACCATGCTGTGGATTCTCCGCACCACTTGGTTGAGAGTATTCCTCCTGAATCCCGTATTGTGTTATGCTCAGGGGATTCAAAACAATCTGCTGGTGTTATCTGCCATGATTCAGAGAGTACAATTCTGTCTACTGCTGATGTGGGAACCGTGTATGATGGTTCTGTGAAGTTGCAACTTGCAGAAAGTGTTTGTGAATCAGATAAAAGAATTTCCGACTGTTGTGAACCAAGAAGCAATCTTGATTTTGTTCAGCCAGACTCTGCAGGATCAAAAGAAGTACATTCTGAATCTGCCACTGGTTGTGGTTCTCGGTGTAGACCCAATGGTGGTTGTGCCTCCAGCGAAGCTGGTCCTCCAACTTGCGTCTTGATGCACCTTAGAAAACAGAACAACCCTGATGATTTGTTTATTGATTGTAAAAAATCTTCCAATGTGGTCAGTGAGCAAAATGCTGATGAAGCAGAAGTGCTTTCTGTCAGAACAACCGATCATCAGACCAGCATAAGTAGTGTAGATAGGCAAACTGTACAGTTAACTTCACGTTCTTGTGCCGAGATTGCAAATGGCGTCAATGATAGTACGAAAGCATCTAGTGCAGCTGGTTCCGATACCCCTCTGGCTGATGGGAACATAGTTCTCAATgataaacctttgatgaaccAGTCTTCAGTAGTGGCTCTTCATTGTGCATCTGCCGATGGTACTCCatgtagtagtagtagtactGAGGCGATAGTTCTGTCAAACCAAGCTAGTTG 4250 0.4028 MRDALRSPKRLGKPEDDMVSEGGVVETKRDDTGQQPSNLTGEVLVHERETSNLIDVKEEMEVVVNEESALDLDTGTGRGIGVDENRNKRRRLSSGDAIEEAGTEMTEKKKQGLNGKVQIGGRVLRSMLKREDDKKTGNGENNGVVVGESRDSDGFKKITVKEEADEFASAGYQKEDDKLRINDNDEKKSKRKRGRPPKVEMKEQDQLVGEMHGKHGRPPKMEIKEEYQSVGKLPRKRGRPPKMEKKEQDHSVGELHQKRGRSPKMEMKEQDQSVAELHRKRGRPPKMEIEVQNQFAAELHRKRGRPPKMEMEEKDQPVGLRKRGRPPKAGLKYNIFKVAHHRKGKVGFGRRKKPLKMRDDDVCSKNNSGKELKSRRFSTVKKSIFGKTLETKSNEVASPLRSNFVEGPVAEKNGKSQEKQFVRDKIKELLFAAGWEVDYRPRNGKEYNDAVYVSLDKKTHWSITLAYNRLKMHYEAGDGEDKVYRAGFKFTPIPQEEFNILTKVINKKRESKQELKQKGKDEGKMGKSMKGKKKRRCSLLEEDDRHITSTKGKLLLVKDDKRLKTKSKKRFAPLVRNAEKESDSEDDGYIPYDGKRTVLAWMIDLGTVLQNAKVYYMKRRTKSKVEGRIMGDGIHCDCCKEIVTVSEFEVHAGSKLCDPFKNIYTEGGTSLLQCLLDSWNKQDESELKGFHSIDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDISKFPSGDWHCIYCCCTFCGLFGRSTDQNNSCDDITAEALLTCCLCEEKYHRSCIEANCVKTDDSSDASFCGKRCQELSQRLEMLFGVKHEIEDGFSWTFIRQSDVGSDASQLKPEMVECNSKLAVALSVMDECFKPYIDHRSGINLIHSILYNRGSNFKRLNYGGFFTAILERGDEIICAASIRIHGNELAEMPFIGTRHMYRRQGMCRRLLNAIESALSSLNVELLVIPAISEMRNTWTSVFGFEPLKVKNKRKIKNMSLLVFPHVDMLQKNITEQHQFADENMIPTEVSCLQRQKNPTVHEVVSKCDVEGSSGSDGVLGSSACQVNETMSTEFGSPRDNVSDDAHNQAEEIKTYQNADSSCIVLAHDEKTVDLDTPLNTCGDSKEERQCLSMSRISTEGTQEGRCGSGFSQGTENMHSEGILTDEIVTNNNHAVDSPHHLVESIPPESRIVLCSGDSKQSAGVICHDSESTILSTADVGTVYDGSVKLQLAESVCESDKRISDCCEPRSNLDFVQPDSAGSKEVHSESATGCGSRCRPNGGCASSEAGPPTCVLMHLRKQNNPDDLFIDCKKSSNVVSEQNADEAEVLSVRTTDHQTSISSVDRQTVQLTSRSCAEIANGVNDSTKASSAAGSDTPLADGNIVLNDKPLMNQSSVVALHCASADGTPCSSSSTEAIVLSNQAS 1416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02875 1416 MobiDBLite consensus disorder prediction 295 322 - -
Bva04g02875 1416 SMART AT_hook_2 234 246 IPR017956 GO:0003677
Bva04g02875 1416 SMART AT_hook_2 256 268 IPR017956 GO:0003677
Bva04g02875 1416 SMART AT_hook_2 278 290 IPR017956 GO:0003677
Bva04g02875 1416 SMART AT_hook_2 300 312 IPR017956 GO:0003677
Bva04g02875 1416 SMART AT_hook_2 190 202 IPR017956 GO:0003677
Bva04g02875 1416 SMART AT_hook_2 320 332 IPR017956 GO:0003677
Bva04g02875 1416 SMART PHD_3 704 745 IPR001965 -
Bva04g02875 1416 SMART PHD_3 748 806 IPR001965 -
Bva04g02875 1416 CDD PHD1_AIRE 705 744 - -
Bva04g02875 1416 CDD NAT_SF 901 960 - -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 511 535 - -
Bva04g02875 1416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 768 IPR013083 -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 511 528 - -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 240 287 - -
Bva04g02875 1416 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 894 979 IPR016181 -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 1 28 - -
Bva04g02875 1416 Pfam Tify domain binding domain 627 676 IPR032308 -
Bva04g02875 1416 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 42 1296 - -
Bva04g02875 1416 SUPERFAMILY FYVE/PHD zinc finger 691 745 IPR011011 -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 1 41 - -
Bva04g02875 1416 PANTHER PHD FINGER PROTEIN 12 42 1296 IPR042163 GO:0003714|GO:0045892
Bva04g02875 1416 ProSiteProfiles Zinc finger PHD-type profile. 702 747 IPR019787 -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 82 111 - -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 67 328 - -
Bva04g02875 1416 MobiDBLite consensus disorder prediction 150 233 - -
Bva04g02875 1416 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 845 1005 IPR000182 GO:0016407
Bva04g02875 1416 Pfam AT hook motif 321 330 IPR017956 GO:0003677
Bva04g02875 1416 Pfam AT hook motif 190 199 IPR017956 GO:0003677
Bva04g02875 1416 Pfam AT hook motif 279 287 IPR017956 GO:0003677
Bva04g02875 1416 Pfam AT hook motif 234 245 IPR017956 GO:0003677
Bva04g02875 1416 Pfam AT hook motif 301 309 IPR017956 GO:0003677
Bva04g02875 1416 PRINTS AT-hook-like domain signature 232 243 IPR017956 GO:0003677
Bva04g02875 1416 PRINTS AT-hook-like domain signature 318 328 IPR017956 GO:0003677
Bva04g02875 1416 PRINTS AT-hook-like domain signature 190 200 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02875 Bva-Chr4 24539825 24548689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02875 109 1008 PHD Transcription Factor Family AT5G36670 40.271 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02875 - - mtr:MTR_1g072130 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02875 04 24539825 24548689 Bva13g02819 13 20503014 20512558 BWGD