Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02854 ATGGAGCAGTATGAAATTCTGGAACAGATTGGCAAAGGTTCCTTTGGTTCCGCTCTGCTTGTAAGACACaagcatgaaaagaaaaaGTATGTCCTCAAGAAGATCCGCCTTGCCCGCCAAACTGATAGGGCCCGTAGATCTGCGCATCAGGAGATGGAACTTGTCTCTAAAGTGCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGCATTGTTTTAGGCTACTGTGAAGGAGGAGACATGGCAGCAGCAATAAAAAAGACTAATGGTGTTCATTTTTCTGAAGAGAAGCTTTGTAAGTGGCTGGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACGAAAGATCAGGATGTTCGTCTGGGTGACTTTGGTCTGGCCAAAATGTTGAAATCTGATGACCTTGCTTCCTCAGTTGTTGGTACTCCAAGTTACATGTGCCCTGAGTTGCTTGCTGATATACCCTATGGCTCAAAGTCCGATATGTGGTCATTAGGATGCTGTATATATGAAATGGCTGCCCACAAGCCGGCTTTTAAAGCTTTTGATATTCAAGCTCtgattaacaaaataaacaagtcTATAGTGGCTCCACTACCAACTATGTATTCTGGTTCTTTTCGGGGACTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTAAGGCCAAGTGCTGCAGAGTTGCTGAATCATCCGCATCTTCAGTCTTGTATTCTTAAAATTCACCTAAAATTGAATAGCCCCAGAAGAAGTACTTTTCCATTCCAATGGCCGGAGTCGAACTATGTACGGAGAACTAGGTTTATGGAGCCAGGATCTTTTTCCACTATTTCTGACAGAGATAAACGGTTGTCATTCAGCAATGACCGGACCTTAAATCCCAGTATTTGTGGAACTGAACATGATTCTCAATGTTCTACTCACAGAGCAGATGAATCCTCTGCTTGCTTCAGTTCAAAACTCCATGAAATATCTGTTGGCTGTGTCAGTGATGAATACAATACCAAGTCAAAAGCCACAAAGTTCTCAACTGCTGATAGGAGCCCAAGATTGAAAGCAGCCCAGGATTCTATTACTCCCAGAAGGCAGATGCCGCCATCAAAGATATCACGTACTGGCTCAAAACGCGATTCAcTTCCTGTATCTCATACTACTGCTGGAAAATCTTCCCCGCGAACACGTAGAGCATCCCTTCCACTGTCCACAAGACCAATTGCCTCAGCAACCCCTTATAGAGCTAATGTTGGTCTCCTTCGAAGTGTGGACTCTCCAGATGTTTCTGTTAATGCACCGAGAATTGATAAGATCGCAGAATTCCCCCTATCCTCTTGTGAGGATCCTCTGATTCCTGCTCGTAGAACATCCTCAACTTCCGCAAAGTGCTCTTCTAGTGCACCAGGGAGTGCTGACTGTTCAATCACAAAAGACAAGTGTACAATCCAGGTTGTGGACAAAGCCAGTGTCCGTACCAGTGTCAGTGATGCTTGCACTGGAGCTCCTGGGAATGAATGCTCTGAATACAATGTGACAACTGGTGAGCCAAGACAGCATCGGTTCGACACCTCGTCTTACCAACAACGTGCTGAGGCATTGGAGGGTTTACTTGAGTTCAGTGCACGGCTCCTTCAACAAAGGAGATTTGAAGAACTGGGGGTGTTGTTGAAGCCATTCGGACCTGAGAAGGTTTCACCGAGGGAAACGGCTATTTGGTTGACCAAGAGCTTCAAAGAAGCCGCGGTCCAAGAAGTTCTGTG 1826 0.4398 MEQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRARRSAHQEMELVSKVRNPFIVEYKDSWVEKGCFVCIVLGYCEGGDMAAAIKKTNGVHFSEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDVRLGDFGLAKMLKSDDLASSVVGTPSYMCPELLADIPYGSKSDMWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVAPLPTMYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQSCILKIHLKLNSPRRSTFPFQWPESNYVRRTRFMEPGSFSTISDRDKRLSFSNDRTLNPSICGTEHDSQCSTHRADESSACFSSKLHEISVGCVSDEYNTKSKATKFSTADRSPRLKAAQDSITPRRQMPPSKISRTGSKRDSLPVSHTTAGKSSPRTRRASLPLSTRPIASATPYRANVGLLRSVDSPDVSVNAPRIDKIAEFPLSSCEDPLIPARRTSSTSAKCSSSAPGSADCSITKDKCTIQVVDKASVRTSVSDACTGAPGNECSEYNVTTGEPRQHRFDTSSYQQRAEALEGLLEFSARLLQQRRFEELGVLLKPFGPEKVSPRETAIWLTKSFKEAAVQEVL 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02854 608 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Bva04g02854 608 CDD STKc_Nek 3 258 - -
Bva04g02854 608 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Bva04g02854 608 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g02854 608 MobiDBLite consensus disorder prediction 364 428 - -
Bva04g02854 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Bva04g02854 608 PANTHER SERINE/THREONINE-KINASE NEK4 1 593 - -
Bva04g02854 608 MobiDBLite consensus disorder prediction 384 428 - -
Bva04g02854 608 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g02854 608 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g02854 608 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 593 - -
Bva04g02854 608 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Bva04g02854 608 SUPERFAMILY Protein kinase-like (PK-like) 1 312 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02854 Bva-Chr4 24441404 24447533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02854 10 260 MAP Kinase Kinase Kinase AT1G53570 30.859 4.80e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Bva04g02854 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02854 K08857 - gmx:100810347 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02854 04 24441404 24447533 Bva13g02803 13 20433828 20439356 BWGD