Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02848 ATGCTTCCCTCTGTAACTTCCCGAACCTTCTTAAGAATCTCTCTCCCATCCACTGGTTGCTATATGAGGAAAAGGgcttctaataaaataacccAGTATTACTCCCAAGGCCAAGATGTCCAGAAACTTCTTTTGTCCATTCAATTTAATCCCCTCCAAGACTCAATTAGCAATTCCTTGACAAATACAGAGTGTGGCAAGTGGCAAAGCAActgtttttttaaatgcatACACCAATTTCCGAAGAAGGAAACAGAGTCTTCTGCATTCTCActaggaaaacaaaaatccaaaGCTTCACTTTTACTTCATGATCACATCTCATCATCCCAAAAATCCCATTTGCAAATTAGAAAACTCTGTTTCTCATCAGAGAAGAGAGTGATCCAAACATACCCAGAATCACAAAACCCGtcaagtttcttcttcttgaagaCAAATTGGAGGATGAATTATCTGCACCCAGTGAAAGAAGAATACCCGGAAGCATCTTCATCTCAATCAGGAGGTGACTGGGAAATGATTCATCCGCCGCAGCCCATGGAGGGGCTTCACGATACAGGACCGCCGCCATTCCTGACCAAGACCTTTGATGTGGTGGACGACCCAACTACCAATCACATAGTTTCGTGGAGCAGAGCAGGTACTAGCTTCGTCGTTTGGGATCCAAATACTTTCTCTACGAATCTCCTTCCCAGATACTTCAAGCATAACAATTTCTCAAGCTTCGTAAGGCAATTAAATACTTACGGATTTAGAAAAATTGATCCAGATAAGTGGGAATTTGCTAACGAAGGATTCGTGAGAGGACACAGGCATCTTTTGAGGAACATAAGGAGAAGGAAAGCACCTTCTCAGCCTGGTCATTACCAAGAAGCACAAGGTCATGTTGTTGAAGTAGGCCAATTTGGACTTGATGAAAAAGTTGACCGTTTGAGGCGTGACAAGAAGGTGCTGATGATGGAACTTGTGAAGCTCAGACAGCAGCAGCAGAACACGAGAGCCTATCTTCAGGCAATGGAGCAAAGGTTACAAGGAACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTAGCCAGGGCCATGAAAAATCCAACCTTTCTTCAGCAGTTAGTTCAGAACAacgaaaagagaaaggagcTCGAAGAAGCCATGAGCAAAAAGAGGAGAAGGCCAATTGAACATGGGTCTAGTAGCGGTGTTGGTATATCAAGCAGTAGTGGGGCAGAACAAAACCTTGTCAAAGCTGAACCACTTGAGTTTGGAGATTATGGGTTTGAAGTGTCAGAATTGGAGGTTCTAGCTATGGAAATGCAGGGTTATGGTAGGGGAAGAGAAAAGGAGGAGGCAATAGAACCATCGGAGAAGCTGGACAAAGAACTCGATGAAGGGTTTTGGGAAGAACTGTTCAGAGGAAATTTTGAAGGTCAAGATGAAGATGTCAATGTCTTGGCCAATCGCTTTGGTTACTTGGGTTCGGGTTCAAGCCCTAAATA 1496 0.4111 MLPSVTSRTFLRISLPSTGCYMRKRASNKITQYYSQGQDVQKLLLSIQFNPLQDSISNSLTNTECGKWQSNCFFKCIHQFPKKETESSAFSLGKQKSKASLLLHDHISSSQKSHLQIRKLCFSSEKRVIQTYPESQNPSSFFFLKTNWRMNYLHPVKEEYPEASSSQSGGDWEMIHPPQPMEGLHDTGPPPFLTKTFDVVDDPTTNHIVSWSRAGTSFVVWDPNTFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFVRGHRHLLRNIRRRKAPSQPGHYQEAQGHVVEVGQFGLDEKVDRLRRDKKVLMMELVKLRQQQQNTRAYLQAMEQRLQGTEMKQQQMMAFLARAMKNPTFLQQLVQNNEKRKELEEAMSKKRRRPIEHGSSSGVGISSSSGAEQNLVKAEPLEFGDYGFEVSELEVLAMEMQGYGRGREKEEAIEPSEKLDKELDEGFWEELFRGNFEGQDEDVNVLANRFGYLGSGSSPK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02848 498 MobiDBLite consensus disorder prediction 378 409 - -
Bva04g02848 498 PRINTS Heat shock factor (HSF) domain signature 192 215 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02848 498 PRINTS Heat shock factor (HSF) domain signature 230 242 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02848 498 PRINTS Heat shock factor (HSF) domain signature 243 255 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02848 498 Coils Coil 309 343 - -
Bva04g02848 498 Coils Coil 371 391 - -
Bva04g02848 498 MobiDBLite consensus disorder prediction 378 395 - -
Bva04g02848 498 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 159 478 IPR027725 -
Bva04g02848 498 SUPERFAMILY "Winged helix" DNA-binding domain 188 281 IPR036390 -
Bva04g02848 498 ProSitePatterns HSF-type DNA-binding domain signature. 231 255 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02848 498 SMART hsfneu3 188 281 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02848 498 Pfam HSF-type DNA-binding 192 281 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bva04g02848 498 Gene3D - 184 282 IPR036388 -
Bva04g02848 498 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 159 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02848 Bva-Chr4 24405614 24407936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02848 178 495 HSF AT3G22830 51.966 3.08e-123 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bva04g02848 HSF_DNA-bind 2.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02848 K09419 - gmx:100794264 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02848 04 24405614 24407936 Bva13g02783 13 20349606 20352868 BWGD