Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02847 ATGTTTCCTGGAGCCATGTCCAATTCAACTTCTTTGTCCGAAGATGCCAGTGTCCCTTCTGGCATAAGAGTTCAGGACTTCGCTGGATTAAACGGTGTAGTTCCAACCATTTCTCCTCAGCATCCTCAaaagatcaagaaaaagagatgcCTACCAGGAAATCCAGACCCAGATGCTGAAGTGATTGCTTTGTCTCCAAAGACCCTTTTGGCCACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAGAACCTTCAGCTTCACAGAAGAGGCCATAACCTTCCATGGAAGCTTAAGCAAAGAAACGGCAACGAGGTCAGAAAGAAAGCCTATGTTTGCCCCGAGCCTTCATGCGTTCACCACAATCCATCAAGGGCTCTTGGTGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGagagaagaaatggaaatgtGACAAGTGCTCAAAGATCTATGCAGTTCAGTCAGATTGGAAGGCTCATTCCAAGACCTGTGGAACAAGAGAATATCGATGTGATTGTGGAATCCTTTTCTCCAGgAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCACTGGCTGAAGAAAGTGCAAGACAAATATCTGCCACAAATCCATTAGttcaatctctctttcttttcccaaACCAGCAAAACTTCCTTAATCCATGGGACCCTTCTCCagaaaaccctaaccctaacaACTTTGCCAATGCCGGTGCTGCCCTCCAAGTCAAGCCTGAAGCTCAGCACTTCCAGATCCCCACTCTCTCTTCATCATTTCTTCATCAACCTCAACACCAAAACAGCAAGATCAGCATGGCCATGATAAACTCACCCTTCCACGTCACCATGCAACCTTCCGCAAACAATGCCACGTCAGCTCACATGTCAGCCACTGCGCTCCTTCAGAAGGCTGCAACAGTTGGTCCTACCGCTATCCCAGGCCCAGGTTCTGCTTCTGTTGTTGGTGTTGGGCAAGTGGGTCACGTGACTGAGCCCGGCATGGCCGAGTTTGGAACACTGAGTCAACTCCACCCGGTGGACCACGACTACGTCAACGCGAGAGGCTTTGCGTCCCGGAATCTCAACAATGACCGTTTCACGAGGGACTTTCTGGGTCTAACTGGGAACACCAACGGTGGTAGTGATGGAGGAAATAACGGTGCCGTTGACGTTAAAGTCAACGTCAAGGATATGCTGACTTTCACCGGGGGCGTAGAGTACCAACCATACGAACATCACCATCACCACACGCTCTTCAAGTCGCAACAAAGTTTTGGATTTGTTGGGACTACCACAGCCCCGGAGGCGTGGGGGAATTGTTG 1355 0.4598 MFPGAMSNSTSLSEDASVPSGIRVQDFAGLNGVVPTISPQHPQKIKKKRCLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNGNEVRKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGILFSRKDSFITHRAFCDALAEESARQISATNPLVQSLFLFPNQQNFLNPWDPSPENPNPNNFANAGAALQVKPEAQHFQIPTLSSSFLHQPQHQNSKISMAMINSPFHVTMQPSANNATSAHMSATALLQKAATVGPTAIPGPGSASVVGVGQVGHVTEPGMAEFGTLSQLHPVDHDYVNARGFASRNLNNDRFTRDFLGLTGNTNGGSDGGNNGAVDVKVNVKDMLTFTGGVEYQPYEHHHHHTLFKSQQSFGFVGTTTAPEAWGNC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02847 451 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 428 - -
Bva04g02847 451 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Bva04g02847 451 MobiDBLite consensus disorder prediction 33 52 - -
Bva04g02847 451 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Bva04g02847 451 SMART c2h2final6 151 171 IPR013087 -
Bva04g02847 451 SMART c2h2final6 75 97 IPR013087 -
Bva04g02847 451 SMART c2h2final6 116 146 IPR013087 -
Bva04g02847 451 Pfam Zinc finger, C2H2 type 75 97 IPR013087 -
Bva04g02847 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Bva04g02847 451 Gene3D Classic Zinc Finger 71 98 - -
Bva04g02847 451 Gene3D Classic Zinc Finger 108 199 - -
Bva04g02847 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02847 Bva-Chr4 24396022 24399465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02847 24 440 IDZ Gene Family AT4G02670 49.533 1.26e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02847 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02847 K25870 - gmx:100780056 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02847 04 24396022 24399465 Bva13g03307 13 22843454 22846950 BWGD