Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02833 ATGGAAGCTGTTGTTTGTGcgaagaaggagaagatggGCTTTGAGGAAACAGAGCTGAGGTTGGGATTGCCTGGAACTAAGAAAGCTGGTGGAGTTGGAGATGGAGATCAAGTGGCCATAAGGAAGAGAGGTTTCTCGGAGACTGAAAGCAGTGATGACGAGTCGGCTACCACCGTGGATTTGAAGCTTAACCTTTCTGCTTCCAAGGATCAAGGTGGCGGAGCACCAGATCCAACTCGTGACAACTCAAACAAGTTTCCTAAGGAGAAGACCCTTCTCCCCGCTGATCCTGCCAAACCTCCCTCCAAggccCAAGTGGTGGGTTGGCCACCGGTGAGATCGTTCAGGAAGAACATTTTATCAGTGCAGAAGAACGGCGGAGAGGAGAGCGAGAAAGGAAGCCCTAACGGGACTGGGAGCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGGAAAGTGGACTTGAAGATGTACAAGAGATACCAAGACCTCTCTGATGCCTTGGCCAACATGTTCAGCTCTTTCACCATAGGGAATTGTGGATCCCAAGGAATATTGAAGGATTTTATGAATGAGAGCAAGTTGATGGATCTCTTGAACAGCTCCGACTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCTTGGGAGATGTTTGTTGAATCATGCAAGCGTCTGCGTATCATGAAAGGAAAGGAGGCTATTGGACTTGcACCAAGAGCCATGGAGAAATGCAAGAACAGAAGCTA 776 0.4742 MEAVVCAKKEKMGFEETELRLGLPGTKKAGGVGDGDQVAIRKRGFSETESSDDESATTVDLKLNLSASKDQGGGAPDPTRDNSNKFPKEKTLLPADPAKPPSKAQVVGWPPVRSFRKNILSVQKNGGEESEKGSPNGTGSFVKVSMDGAPYLRKVDLKMYKRYQDLSDALANMFSSFTIGNCGSQGILKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKNRS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02833 258 Gene3D - 135 252 - -
Bva04g02833 258 ProSiteProfiles PB1 domain profile. 139 240 IPR000270 GO:0005515
Bva04g02833 258 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 251 IPR003311 GO:0005634|GO:0006355
Bva04g02833 258 MobiDBLite consensus disorder prediction 22 107 - -
Bva04g02833 258 SUPERFAMILY CAD & PB1 domains 130 239 - -
Bva04g02833 258 Pfam AUX/IAA family 16 249 IPR033389 -
Bva04g02833 258 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02833 Bva-Chr4 24283820 24286074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02833 116 248 B3 DNA Binding Superfamily AT4G23980 29.078 9.08e-08 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bva04g02833 AUX_IAA 2.7e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02833 K14484 - gmx:100810013 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02833 04 24283820 24286074 Bva13g03443 13 23520452 23520748 ECH
Bva04g02833 04 24283820 24286074 Bva04g03385 04 27002694 27005725 ECH
Bva04g02833 04 24283820 24286074 Bva04g02833 04 24283820 24286074 ECH
Bva05g02139 05 16187269 16189744 Bva04g02833 04 24283820 24286074 ECH
Bva10g01822 10 12144602 12146950 Bva04g02833 04 24283820 24286074 ECH