Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02825 ATGGCGAATCAGGTGGCCAGAGTAAATAGGGATACGATTGCAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTACACAGATGCCACCACTATATCTGAATGTCTTCATACGTTTTGCAGGAAGTgcatttatgataaaattacagATGAGGAGTTAGAATGCTGTCCAATATGCAATACTGAGTTGGGTTGTGTCCCTCTCGAGAAATTGAGGCCCGACCACAGTTTGCAAGATTTGAGGGCTAAGATTTTTCCATctaagaaaacaaaggaaaaggcACCAGAAGCTGCCCCTTCTGTAACATTACCAGTTAGAAGAAAGGAGAGATCACTTTCGTCTTTGGTAGTTAGCACTCCCAGAGTATCAGCCCAGGCAACCATGACGGGGAGAAGAACGAAACCTACAAGAAAGGCTAGTGGCCTGCGGGCCTCTACTTTTTCCATTGAGAAAACCGTTAAAAAGGAGGAAGAATCAGTGGAAGACCATTCAGAGAGTTCAAGCTCGCCTGACATTTTGAAGAAGTTTACTCAGAATAATGGACAGAATTCGTCCCCTGGTGAGGGTAGCCAATCTATACCCAATAAAGAAACAGAAGATGCTGCTGAACAATGTGAAGCAAAATTGGATCTGTGGAAACCTTTGAATTGTTTAGTACAGGCTGCTACTAGTAGAAGTAAATCTTTCAAGTCTAACATGCAAGCATCTGATGTTAAACTAGAACAAAAGCAAGTTAGTGGTAGTGATTCTCAAgtgaacaaaaccaaaaataaggaaaatagGCGCAAGGCAAAGGTTGAGGATGAAAAGACTCGCACTGATCCTGTGTCATCAGACATGGCAAAACCCAATAAATTGCGCAGAGTGCGCCGGAAAAAGGAATCTGTTTCTGGAGAAGTGAGCATATCACCCCAAGCTGTGCTGGATGCTACTAGTGCCAAACTCAGAGAAAGGACTGGTCCAATTTGGCTCACCTTGGTAGCTTCTGAAGACCAGGAAGGAGATGCACCTTTACCCCAAATTCCTTCAAGTTATTTAAGAATCAAGGATGGAAGTGTACCTGTCTCATTTGTTCAAAAATACCTGACGAAGAAATTAAATCTGGCCAGCGAAGACGAGGTTGAGATTAAATGTATGGGACAACCAGTGGTTAATACACTGCAACTGTATGATTTGGTTGACTTGTGGCTGCAAACAGCATCCACACCAGAAAGAATTCCAGCAACTGTTGGGTCCTCAGGAAAGGATTTTGTAATGGTGTTGACCTATGCTCGGAAGGTCCCAAATCCTTG 1292 0.4156 MANQVARVNRDTIAACMTCPLCNKLYTDATTISECLHTFCRKCIYDKITDEELECCPICNTELGCVPLEKLRPDHSLQDLRAKIFPSKKTKEKAPEAAPSVTLPVRRKERSLSSLVVSTPRVSAQATMTGRRTKPTRKASGLRASTFSIEKTVKKEEESVEDHSESSSSPDILKKFTQNNGQNSSPGEGSQSIPNKETEDAAEQCEAKLDLWKPLNCLVQAATSRSKSFKSNMQASDVKLEQKQVSGSDSQVNKTKNKENRRKAKVEDEKTRTDPVSSDMAKPNKLRRVRRKKESVSGEVSISPQAVLDATSAKLRERTGPIWLTLVASEDQEGDAPLPQIPSSYLRIKDGSVPVSFVQKYLTKKLNLASEDEVEIKCMGQPVVNTLQLYDLVDLWLQTASTPERIPATVGSSGKDFVMVLTYARKVPNP 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02825 430 MobiDBLite consensus disorder prediction 112 202 - -
Bva04g02825 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 - -
Bva04g02825 430 MobiDBLite consensus disorder prediction 225 253 - -
Bva04g02825 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Bva04g02825 430 MobiDBLite consensus disorder prediction 170 198 - -
Bva04g02825 430 Gene3D - 294 403 - -
Bva04g02825 430 MobiDBLite consensus disorder prediction 149 169 - -
Bva04g02825 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Bva04g02825 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Bva04g02825 430 MobiDBLite consensus disorder prediction 254 284 - -
Bva04g02825 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 IPR044807 GO:0004842
Bva04g02825 430 MobiDBLite consensus disorder prediction 112 147 - -
Bva04g02825 430 SUPERFAMILY RING/U-box 14 85 - -
Bva04g02825 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 103 IPR013083 -
Bva04g02825 430 MobiDBLite consensus disorder prediction 225 293 - -
Bva04g02825 430 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02825 Bva-Chr4 24247344 24253110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02825 2 349 C3H Transcription Factor Family AT2G30580 54.000 1.03e-112 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02825 K16277 - gmx:100793731 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02825 04 24247344 24253110 Bva13g02748 13 20134139 20140684 BWGD
Bva04g02825 04 24247344 24253110 Bva13g03447 13 23530117 23535478 ECH
Bva04g02825 04 24247344 24253110 Bva04g03386 04 27006425 27008418 ECH
Bva04g02825 04 24247344 24253110 Bva04g02825 04 24247344 24253110 ECH
Bva04g02825 04 24247344 24253110 Bva13g02748 13 20134139 20140684 ECH
Bva05g02141 05 16206290 16210018 Bva04g02825 04 24247344 24253110 ECH