Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02820 ATGGCGGATGTTGAAGCAGATGTCGCAACAGGAATTCCCAAGAAGAGAACATTCAAGAAGTTCAGTTTCAGAGGGGTTGATCTCGATGCTCTGCTGGACATGTCTACCGACGAGCTTGTCAAGCTCTTTAGTGCTCGTGCGCGCAGAAGGTTCCAGCGCGGTTTGACAAGGAAGCCTATGGCACTAATCAAGAAGCTGCGCAAGGCGAAAAGGGAGGCTCCACCTGGTGAGAAACCAGAGCCAGTAAGGACTCACCTACGCAACATGATCATTGTGCCCGAGATGATTGGTAGCATAATTGGTGTTTACAACGGGAAGACCTTCAATCAAGTTGAAATCAAACCAGAAATGATCGGCCACTATCTAGCTGAATTCTCAATTTCTTACAAGCCCGTCAAGCATGGAAGGCCCGGTATTGGTGCTACTCACTCCTcaaggttcattcctcttaaATG 455 0.4659 MADVEADVATGIPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02820 151 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 Gene3D 30s Ribosomal Protein S19; Chain A 9 151 IPR023575 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 Hamap 30S ribosomal protein S19 [rpsS]. 47 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 Pfam Ribosomal protein S19 49 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 SUPERFAMILY Ribosomal protein S19 54 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 TIGRFAM uS19_arch: ribosomal protein uS19 18 151 IPR005713 GO:0003735|GO:0006412|GO:0015935
Bva04g02820 151 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 151 IPR002222 GO:0003735|GO:0005840|GO:0006412
Bva04g02820 151 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 151 - -
Bva04g02820 151 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02820 Bva-Chr4 24225844 24228143 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02820 1 151 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.079 4.66e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02820 K02958 - vvi:100256302 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02820 04 24225844 24228143 Bva04g02820 04 24225844 24228143 ECH