Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02818 ATGTCGACCGAAGAGCCCACTGTGGCCGTGGACACAGCGCCCGAGCCTGCAAATGCCGAGCCAGCTGAGGAAAAGCCAGCCACCACCAAAGCTGGTAAGACCAAGAAAGCTAAGGAGCCCAAGCCTAAAAAAGCCGCTGCTCCCAGATCGCGCAATCCTCCTTCACACCCTTCTTATGAAGAGATGATCAAGGATGCGATTGTTACGCTGAAGGAGAAGACAGGTTCCAGCCAGTACGCGATTACAAAGTTCATTGAAGAGAAACACAAGCAGCTTCCACCCAACTTCAGGAAGCTTTTGTTATTCCATTTAAAGAAGCTCGCGGCTTCTGAAAAGATTGTGAAGGTGAAGGGCTCCTTCAAGCTTCCCCCTGCTAGGTCGTCAGCGCCAAAGCCGGCTTCGACTTCTTCTCAGGCGAAGAAGAAGCCTGTAGCTGCTAAGGCTAAGCCAAAGCCAAAGCCAAAGCCTAAGCCTAAGCCAGCTTCCAAGACTAAGGAAACCAAGAAGGCACCAGCTAAAGCTCCTGCTAAGGCTAAGGCAACTGCCAAACCAAAGCCTAAACCGGCTGTCAAGCTGAAGGCTGCCGCGAAGCCCAAAGCTTCTCCAGCAAAGGCCAAGTCTGCCGCAAAGCCAAAAGCTGCTGCTAAGCCAAAGGCAGCTGCCAAGCCGAAGCCAAAGGAGAGGCCCGCTAAAGCTTCAAGGACATCTACGAGAACATCTCCTGGGAAGAGAGCGGCCGCTCCTAAACCGGCACCCAAGAAGGCTCCAGCTGCCAAAAAAGCTCCCGCTAAAAGCGTTAAGCCTAAGAGCGTAAAGTCTCCTGCGAAGAAGTCTACATCGAAGAGAACAAGGAAGTG 857 0.5263 MSTEEPTVAVDTAPEPANAEPAEEKPATTKAGKTKKAKEPKPKKAAAPRSRNPPSHPSYEEMIKDAIVTLKEKTGSSQYAITKFIEEKHKQLPPNFRKLLLFHLKKLAASEKIVKVKGSFKLPPARSSAPKPASTSSQAKKKPVAAKAKPKPKPKPKPKPASKTKETKKAPAKAPAKAKATAKPKPKPAVKLKAAAKPKASPAKAKSAAKPKAAAKPKAAAKPKPKERPAKASRTSTRTSPGKRAAAPKPAPKKAPAAKKAPAKSVKPKSVKSPAKKSTSKRTRK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02818 285 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 55 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g02818 285 SUPERFAMILY "Winged helix" DNA-binding domain 52 133 IPR036390 -
Bva04g02818 285 PRINTS Histone H5 signature 209 228 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g02818 285 PRINTS Histone H5 signature 149 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g02818 285 PRINTS Histone H5 signature 42 63 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g02818 285 PRINTS Histone H5 signature 187 204 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g02818 285 PRINTS Histone H5 signature 69 86 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bva04g02818 285 MobiDBLite consensus disorder prediction 144 158 - -
Bva04g02818 285 Gene3D - 50 135 IPR036388 -
Bva04g02818 285 MobiDBLite consensus disorder prediction 26 46 - -
Bva04g02818 285 SMART h15plus2 53 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g02818 285 PANTHER HISTONE H1 2 285 - -
Bva04g02818 285 MobiDBLite consensus disorder prediction 159 173 - -
Bva04g02818 285 MobiDBLite consensus disorder prediction 1 63 - -
Bva04g02818 285 MobiDBLite consensus disorder prediction 270 285 - -
Bva04g02818 285 MobiDBLite consensus disorder prediction 115 285 - -
Bva04g02818 285 CDD H15 53 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g02818 285 Pfam linker histone H1 and H5 family 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bva04g02818 285 PANTHER HISTONE H1.1 2 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02818 Bva-Chr4 24217841 24219149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02818 50 141 Single Myb Histone (SMH) Gene Family AT1G72740 32.632 5.88e-10 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02818 04 24217841 24219149 Bva04g02818 04 24217841 24219149 ECH