Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02793 ATGAGCTCCTCCGAATCTTCTTCTATACCTTTTAGATCTAAGATGCCCCATCACACTGCCTCTAAATCCAAATCACCAGATTCCGTTCAATTGAGCTCCAAAACTCCAGAGAAGCCCCCACAGTTCTCAAACCGTTCACGCAACCGTGGCGTCGCACACTCTATCAAAGAAATCAGGAAGGTTGCTCAAACCCTTCAGGAACGGAATCGCGAGCAGCACCATGATCCGACGGCGCATATCAAATCTGCCAGAAGGCAGATTACAATGTTGTCTCCCCGTAAATCCAATGTTCTGGTTGAAGAACCCACCAAGCTGCCGGAAaaGTATGAAATATTGGCGGAGTTCTTCGATAGTTTGGATAGTTCGATTCGGTTATTGCGTTTAAAAGGGTCGATCCCAACTTTCACGAATATTTGCCCGAAGATTCAATGCTTAACTGATAGGAGGTTTACCCATGGGCACTTAGCCCAGTTGAAGTTTATCTTACGTGAGGCAATTGTCATAAAGATGGTGCTTATGTTAGATGAACGGACAAGTTGTATGAAGCCAGACCTCCATGTTACTTTAAACAATGATGCAATAGAATCTGATGCAAAATTGCTCTCTGAATCTGGAAGTATGTCACTGAGGAAGTTTGTTCGTAAATGGCTCAGAGATTTTCTTAAAACTCATCCTGagGGTGGTGAAATTCCAGAAGAGATGTTGCCTGAACCGTTCAATCGCCCAAAGCAAGACCATTCAGACTCGTTGAAGATTTCCTCATCATCATTCCCTACAGAGGCATCATCCGGCGTATGTGTAGCTCGTCCCTCATCATTGTCAGCTTGCTTGCAGGATGATGAAACTTCAGATAAAGAAGAACTCGGTTATGACAATCTCAAGAATCAGGATTTGACATCAAGTATAAACAGTGGAGAAAACTTGTCAATGCCCGTCAAGATGTCTATTGAAGCACTTAACCAACCGCCAGCAGTAGCCACTCATCtgtcacaattttttaaaaggcgCTTCTCTCAGAAATCTGTGAGAAATGAAGCTGATAGTTCACAGCAAAAATTGCCATCAGATTCATCCCAACCTCCACCATTTCCAGTTTCAGAGTCAAGCCCGAAGAAAAGTACTTCCTGTAAGGAAACTAGATCTCCTCCCAATTCATCCTCATCTAAGCTGGCCTTAGAAGCAGTCAGTAACGAAAGGTCTCCAACAGTTTGTGCTTCTCCAAGTCGTTTCACATCATCAGGCGGTCCAGCTGCCACTCCAAGTAAAACCACCAAGTATTTGGAGAATGAAGATGGTTCTCTCCAAAACATTGCTACTATGTCAACTCCAGCTAAACTTGCTTTTACTCCATCTAGGCTTATGACTGTTACTCCTTCACTGCCTCCGCCTAAGAGATGTTACATGAGCCCTGATGACAATACTTCCAGCTCACCAAACAAATTGGTTAGGCGTCCACCTCGTTCAAGGTCATTGAAATTTGACAGTCCGGTGAAGAATGAGGAGACTGACAGTGGATTTAATGATGCTGGAAGCCTATCAATTGACAAAGATATTTTTGACATTCTCCCAGAGAATCTTCTCCAGTCGattagagaaaaggaaagaatagcaatggaagaaagaaatccAGCCATCTCACGAGCCAAGAGGCGACAGCAAATGATTGTCAGTCTCCCTAAGCTATTTAACATGATTCATATGTTGTTTCATTCAATAAACCGTTCCGTTATCACAAAAGAGGAGCTTGTAAGCAAGATAATATCAAGCCACAGTTACATTGTTGACAGAAGGGAAGTGGAGGAACAGCTGAATTTGTTGCTAGAACTAGTTCCAGAATGGATTTCTGAAAAGAAGGCATCTAGTGGGGATTTGCTTTTCCGAATAAACAAAATGTTGAACGCCGAGACTATGCGCTCGATGCTTGAACAAGCAAAATA 1937 0.4182 MSSSESSSIPFRSKMPHHTASKSKSPDSVQLSSKTPEKPPQFSNRSRNRGVAHSIKEIRKVAQTLQERNREQHHDPTAHIKSARRQITMLSPRKSNVLVEEPTKLPEKYEILAEFFDSLDSSIRLLRLKGSIPTFTNICPKIQCLTDRRFTHGHLAQLKFILREAIVIKMVLMLDERTSCMKPDLHVTLNNDAIESDAKLLSESGSMSLRKFVRKWLRDFLKTHPEGGEIPEEMLPEPFNRPKQDHSDSLKISSSSFPTEASSGVCVARPSSLSACLQDDETSDKEELGYDNLKNQDLTSSINSGENLSMPVKMSIEALNQPPAVATHLSQFFKRRFSQKSVRNEADSSQQKLPSDSSQPPPFPVSESSPKKSTSCKETRSPPNSSSSKLALEAVSNERSPTVCASPSRFTSSGGPAATPSKTTKYLENEDGSLQNIATMSTPAKLAFTPSRLMTVTPSLPPPKRCYMSPDDNTSSSPNKLVRRPPRSRSLKFDSPVKNEETDSGFNDAGSLSIDKDIFDILPENLLQSIREKERIAMEERNPAISRAKRRQQMIVSLPKLFNMIHMLFHSINRSVITKEELVSKIISSHSYIVDRREVEEQLNLLLELVPEWISEKKASSGDLLFRINKMLNAETMRSMLEQAK 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02793 645 MobiDBLite consensus disorder prediction 487 501 - -
Bva04g02793 645 MobiDBLite consensus disorder prediction 340 424 - -
Bva04g02793 645 MobiDBLite consensus disorder prediction 22 49 - -
Bva04g02793 645 MobiDBLite consensus disorder prediction 455 506 - -
Bva04g02793 645 PANTHER DNA REPLICATION FACTOR CDT1 10 645 IPR045173 GO:0003677|GO:0030174|GO:0071163
Bva04g02793 645 MobiDBLite consensus disorder prediction 227 263 - -
Bva04g02793 645 SMART CDT1_2 105 237 IPR014939 -
Bva04g02793 645 MobiDBLite consensus disorder prediction 277 304 - -
Bva04g02793 645 MobiDBLite consensus disorder prediction 227 248 - -
Bva04g02793 645 MobiDBLite consensus disorder prediction 469 483 - -
Bva04g02793 645 CDD Cdt1_m 98 246 IPR014939 -
Bva04g02793 645 SUPERFAMILY "Winged helix" DNA-binding domain 102 239 IPR036390 -
Bva04g02793 645 CDD Cdt1_c 516 642 IPR032054 -
Bva04g02793 645 Pfam DNA replication factor Cdt1 C-terminal domain 525 619 IPR032054 -
Bva04g02793 645 Gene3D - 515 645 IPR038090 -
Bva04g02793 645 MobiDBLite consensus disorder prediction 1 54 - -
Bva04g02793 645 MobiDBLite consensus disorder prediction 368 424 - -
Bva04g02793 645 MobiDBLite consensus disorder prediction 340 356 - -
Bva04g02793 645 Pfam DNA replication factor CDT1 like 105 178 IPR014939 -
Bva04g02793 645 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02793 Bva-Chr4 24087251 24094606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02793 441 643 Core DNA Replication Machinery Family AT2G31270 52.358 8.23e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02793 K10727 - qsu:112033519 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02793 04 24087251 24094606 Bva04g02793 04 24087251 24094606 ECH