Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02792 ATGAATTCCTCCTTCTTTCTACGCCCAGATTGGGAAATCTGGCACGATGACTGCTCCTCGGGTTTTCTGTGGGAATCTTGTTCAACCACTACCGCCACTTCTCATTTTGATCACCTCGTCCATGATCATTCCATTTCCTTCGATATGCCGGACCAGCACTACCCCACAGATCCCCAACCACCAATGTTCGAGAAGTCGAAGAAAATACAGACGTCTGATTCTGAGGTACAAGGGCAGCAGCGTCTTGACAGCAAGGACAAATCCTATATTGGTGTCAGGAAAAGGCCGTGGGGAAAATTTGCGGCGGAGATCAGAGACACGACAAGGCATGGTGCCAGGGTTTGGCTTGGGACCTTTGACACTGCAGAAGCAGCTGCTTTGGCTTATGACCAAGCCGCTTTTTCCATGAGGGGTTCTGCTGCTGTTCTTAATTTTCCAGAGGAAAGGGTTCGAGAATCGTTGCAGGACATCAAGTATGGCTGCCATAGAGGGTCTTCGCCTGCATTAGCTTTGAAGCACAAATATTGCGCTCAACGAAAACTGGCAGCAAAggcaaacaaaaacaaaggcaAGCCGGGAACCCACTCAAATAGTGTGCTGGTGCTAGAGGACTTGGGTGTTGACTATCTTGAGCAGCTTCTTGCCATATCTGATGAAAATACAAGCTCCAGCTCTAGCAGCACCCATTtcgaata 695 0.4719 MNSSFFLRPDWEIWHDDCSSGFLWESCSTTTATSHFDHLVHDHSISFDMPDQHYPTDPQPPMFEKSKKIQTSDSEVQGQQRLDSKDKSYIGVRKRPWGKFAAEIRDTTRHGARVWLGTFDTAEAAALAYDQAAFSMRGSAAVLNFPEERVRESLQDIKYGCHRGSSPALALKHKYCAQRKLAAKANKNKGKPGTHSNSVLVLEDLGVDYLEQLLAISDENTSSSSSSTHFE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02792 231 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Bva04g02792 231 MobiDBLite consensus disorder prediction 52 83 - -
Bva04g02792 231 PANTHER DNA-BINDING DOMAIN 65 217 IPR044808 GO:0003700|GO:0009873
Bva04g02792 231 Pfam AP2 domain 88 138 IPR001471 GO:0003700|GO:0006355
Bva04g02792 231 SMART rav1_2 88 152 IPR001471 GO:0003700|GO:0006355
Bva04g02792 231 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700|GO:0006355
Bva04g02792 231 SUPERFAMILY DNA-binding domain 88 147 IPR016177 GO:0003677
Bva04g02792 231 Gene3D AP2/ERF domain 87 147 IPR036955 GO:0003700|GO:0006355
Bva04g02792 231 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Bva04g02792 231 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Bva04g02792 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 65 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02792 Bva-Chr4 24081838 24082533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02792 86 223 AP2-EREBP Transcription Factor Family AT3G23240 58.571 2.98e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g02792 AP2 4.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02792 K14516 - gmx:100782036 207.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02792 04 24081838 24082533 Bva04g02792 04 24081838 24082533 ECH