Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02790 ATGGAGTTCAATTCTTCCATCTTCCAATACGAAAATCTTGGATATTACCCCGAACCAGATTCGTTTGTTTCTTCAGCAGAATCTGTCCTCTGGGacgatttctttttgttcaacCAAGACAATGCCATTCCTAATTTCAACTATGATTACTGCTCCGACAAAATTAACCTTCACGATGAAATCAAGGAATCATCTTCCGGAGGCAATTCTTCGTCCTTTGTTTCCGTGGGGTCAGCTAGCGTTGAATCACAGGAGGTCTCCTCCAATTTCGATTTCTCCCAAGTAAAACAACATGCACCTGTATCACCGCCTCCGGCAGAGGGAACTAAGAGGCCGTACAGAGGAGTTAGGAGTCGGCCGTGGGGGAAATTCGCGGCGGAGATAAGGGACTCCACCAGAAGCGGCGTTCGAGTGTGGATCGGAACATTTGACACGGCGGAGGCGGCTGCTTTGGCTTATGATCAAGCGGCTCTGTGCACGAGGGGTTCCATGGCGGTGCTTAATTTCCCAGAATCAGTGGTGAGAGAATCGCTTAAAGACATGCCGGCATCTCTGAGCAGAGATTCCTCGCCCGCGTTAGCACTCAAGAGAAAGTACACCTTGCGAGGAAAGTCATCAAAAGCTACTTCTACTTCTACTAGTAGGAGTAACAAAAGGGCCAAACGCCATTCCAGTTCCAGTTCCAGTTGCAGCTCCAGCGTTAACGCTTACGAAAATCCTCAAAATGTTTTGGTGTTGGAGGATTTGGGTGCCGATTATCTTGAACAACTTTTGACTTGCACTACATCTCAAACTTGGTGCTg 803 0.4682 MEFNSSIFQYENLGYYPEPDSFVSSAESVLWDDFFLFNQDNAIPNFNYDYCSDKINLHDEIKESSSGGNSSSFVSVGSASVESQEVSSNFDFSQVKQHAPVSPPPAEGTKRPYRGVRSRPWGKFAAEIRDSTRSGVRVWIGTFDTAEAAALAYDQAALCTRGSMAVLNFPESVVRESLKDMPASLSRDSSPALALKRKYTLRGKSSKATSTSTSRSNKRAKRHSSSSSSCSSSVNAYENPQNVLVLEDLGADYLEQLLTCTTSQTWC 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02790 267 MobiDBLite consensus disorder prediction 94 116 - -
Bva04g02790 267 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Bva04g02790 267 PANTHER DNA-BINDING DOMAIN 24 261 IPR044808 GO:0003700|GO:0009873
Bva04g02790 267 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Bva04g02790 267 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Bva04g02790 267 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Bva04g02790 267 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 261 - -
Bva04g02790 267 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Bva04g02790 267 MobiDBLite consensus disorder prediction 201 235 - -
Bva04g02790 267 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Bva04g02790 267 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Bva04g02790 267 SUPERFAMILY DNA-binding domain 113 172 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02790 Bva-Chr4 24069141 24069944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02790 29 259 AP2-EREBP Transcription Factor Family AT2G31230 43.621 3.16e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva04g02790 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02790 K14516 - gmx:100780775 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02709 13 19947681 19948397 Bva04g02790 04 24069141 24069944 BWGD
Bva04g02790 04 24069141 24069944 Bva04g03425 04 27224034 27225499 ECH
Bva04g02790 04 24069141 24069944 Bva04g02790 04 24069141 24069944 ECH