Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02788 ATGGATTTACCAGACTCTTGTTCTTCTCTCTTACGGAACCCAAACCTTCAAtgctattttgaaaattcctTTGTTTCTTCAGCAGAATCAGAATATGCCTTGTGGGacgatttctttttgttcaacCAAGATAATAGTAATACCAACCCTTTCAACTTTGATTACTCCTCCGACAACATGAACCTTTGCGATGAAATTAAGGAATCCTCTTCCGGAGGCAATTCTTCGTCCTTTGCTTCCGCGGGGGCAGCTAGCGTTGAATCACCGGAGGTCTCCTCCAATTTCGATTTCTCCCAAGTGAAAGAATCACCTGCATCATCGCCGCCGGCAGAGGGAAATAAGAGGGAGAAGAGGCCGTACAGAGGAGTTAGGAGTCGGCCGTGGGGGAAATTCGCCGCGGAGATAAGGGACTCCACAAGAAACGGGGTTCGAGTGTGGATCGGAACATTTGACACGGCGGAGGCGGCTGCTTTGGCTTATGATCAAGCGGCTTTGTGCACGAGGGGTTCCCTGGCGGTGCTTAATTTCCCAGAATCAGTGGTGAGAGAATCGCTTAAAGACATGCCGGCATCTCTGAGCAGAGATTCCTCGCCCGTGTTAGCACTCAAGAGAAAGTACACCTTGCGAGTAAAGTCGTCAAAAGCTACTTCTACTTCTACTAGTAGCAGTAACAAAAGGGCCAAACGCCATTCCATTTCCAGTTCCAGTTGCAGCTCCGGCGTTAACGCTTaccaaaattctcaaaatgttTTGGTGTTGGAGGATTTGGGTGCCGATTATCTAGAACAACTTTTGACTTGCACTTCATCTCAAACTTGGTgctg 824 0.4515 MDLPDSCSSLLRNPNLQCYFENSFVSSAESEYALWDDFFLFNQDNSNTNPFNFDYSSDNMNLCDEIKESSSGGNSSSFASAGAASVESPEVSSNFDFSQVKESPASSPPAEGNKREKRPYRGVRSRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALCTRGSLAVLNFPESVVRESLKDMPASLSRDSSPVLALKRKYTLRVKSSKATSTSTSSSNKRAKRHSISSSSCSSGVNAYQNSQNVLVLEDLGADYLEQLLTCTSSQTWC 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02788 274 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 268 - -
Bva04g02788 274 CDD AP2 120 179 IPR001471 GO:0003700|GO:0006355
Bva04g02788 274 PANTHER DNA-BINDING DOMAIN 16 268 IPR044808 GO:0003700|GO:0009873
Bva04g02788 274 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
Bva04g02788 274 MobiDBLite consensus disorder prediction 213 241 - -
Bva04g02788 274 SUPERFAMILY DNA-binding domain 120 179 IPR016177 GO:0003677
Bva04g02788 274 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Bva04g02788 274 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Bva04g02788 274 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Bva04g02788 274 MobiDBLite consensus disorder prediction 97 123 - -
Bva04g02788 274 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Bva04g02788 274 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02788 Bva-Chr4 24052529 24053583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02788 116 266 AP2-EREBP Transcription Factor Family AT2G31230 59.119 2.34e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Bva04g02788 AP2 9.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02788 K14516 - gmx:100780775 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02788 04 24052529 24053583 Bva13g02704 13 19908048 19909020 BWGD