Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02774 ATGCATATAGGTCAGACGGATACAACTTCAGTAAAATGCCTTATCAACAGCATTTCTCGATTCATTCTCCTAGTATCTTGCCAAAGAGGAAAACCTGTGCCCTTTGAGAAGAATTGTAGTAATATGGTTGGTGTGTTAAAGCGTTTGAAACCAGTGCTTGATGATGTTGTTGATTATAAAATCTATTCAGATGAAATTCTATGTAAAGGGTGTGAAGAATTGGATATGGCTGTCAATGAAGCTAGAGAGTTCATGGAAAAATGGTGTCCAAAGAAGAGCAAGGTTCATACAGTTCTACAAAGTGGACAATTATTGATGAAAATTCAGAGCTCTTCTCTTGAGATTTGTCACATCATATTTAGATCCCTACAATCATCTCCATCTACTTCAGTTTTAGCTAGTCTTCAGCACTATTTGCAGGAACTTCAGTGTTTGAAGAAGGAACCGGCAACTATGCATATAGAAGAGGCGCTGAGAAAACAAAGGGAAGATATAGAATCTTGCAATGAacatattaagaaaattattgagtTACTTAACTTGAAATCAAACCAGGAACTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCTGAagccaataaaaagaaagggaaattaGATGAAATTGACGAAATTGTGAATCTTGTCTGCAAGTTACGTGATTATGCTATGAAAATTGAGCGTCTCGAAGTCAAAAGCGGCGTCTCTGTCCCTCCATACTTCCGCTGCCCCTTATCTCTGGAACTCATGTTGGATCCTGTTATCGTGGCTTCTGGTCAGACATATGAGAGGCTGTCCATCCAAAAGTGGCTTGATCATGGCTTGACTGTTTGTCCCAAGACTCGTCTGAGACTTACCCATACGAATCTCATTCCCAATTATACTGTCAAAGCTATGATAGCAAGTTGGTGTGAGGAAAATAATATCAAGCTTCCGAATAACTCCATGCTCAATAATTCTGTCCGTGTCACATCCTCCGCAGATGATTTATTGCCTCAAGCAAATGGCGTTGGATTTTTACAAGATAGCAATTCGACATCAAGATCATCTTTTCAAACTATTAATGCATTTGAACAGCAAAAGGATGATATATCCTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGTAGAGAAACAGAAAACTTTGAGCAACAATCTCTTGCACCATCATATATTTACAGCGGTAGTGAATCATTTTCGAGCTCTATTTGTAGTACTGATTATGTACTTCCTGTTTCAAAAGAGTTGTCAGGGGTATCCATTAAGCATGAAAATGTGCATGAGTTGTCTGGAGAAATCACAAATGGGGGTCCTACTCCTTCTCCTGCAAATAAAGAGTCAGGGAGTTCTCATTGTTTATCAGGAGAGGAATTTGTAAACCCTGGTCCAAAAAGTGGCGTAGTAGAGaatggaaataataataatcattcaAGAGGAAATTCCATTCCTGTTTCTAACTCGGGATTCAATGTGTTGACTACATCTCATGTGAATAAGTTGATTGAAGACCTACAAAGCCAATCAAATGAAGTGCAAACAAAGGCTGCAGAAGAACTGAGGCTCCTTACAAAGGATAGCATAGAAAACCGTATCATTATAGGCCAGTGTGGGGCTGTTATGCCTTTACTTTCGCTGCTGTATTCAGATAAGAAACTAACACAAGAGCATGCGGTGACAACTTTGctgaatttatcaattaatgaaGACAACAAGGCCTTGATTGCTGAAGCAGGAGCAATAGAACCTcttgtttatgttttgaaaacAGGAAATAACGGAGCCAAGGAGAATTCTGCAGCAGCTCTATTCAGCGTCTCTGTAATTGAAAACTATAAGGAAAAAATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTAAATCTTCTGGGTTCAGGAACTGTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTATCAATCTTTCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTATCTGGTTCAGTTACTGGACCCTGCCGATAGAATGGTTGACAAGGCTGTGGCTCTACTGGCAAACCTGTCAACAATTCCAGAGGGCCAGTTGGCAATTGCAAGGGAAGGGGGCATCCCTTCACTGGTTGAACTTGTTGAATCAGGCTCCCCCAGGGGAAAGGAAAATGCTGCTTCCATTGTCTTGCAACTATGTCTTCATAGTCCCAAGTTTTGTACCCTGGTTCTGCAAGAAGGTGCTGTACCTCCCCTAGTTGCATTATCTCAGTCCGGTACGCCCCGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAGTCAACGGGAAGGAGCCACAGGGAAGGGGAAATCATA 2363 0.3948 MHIGQTDTTSVKCLINSISRFILLVSCQRGKPVPFEKNCSNMVGVLKRLKPVLDDVVDYKIYSDEILCKGCEELDMAVNEAREFMEKWCPKKSKVHTVLQSGQLLMKIQSSSLEICHIIFRSLQSSPSTSVLASLQHYLQELQCLKKEPATMHIEEALRKQREDIESCNEHIKKIIELLNLKSNQELLKESIAVEKERLNAEANKKKGKLDEIDEIVNLVCKLRDYAMKIERLEVKSGVSVPPYFRCPLSLELMLDPVIVASGQTYERLSIQKWLDHGLTVCPKTRLRLTHTNLIPNYTVKAMIASWCEENNIKLPNNSMLNNSVRVTSSADDLLPQANGVGFLQDSNSTSRSSFQTINAFEQQKDDISSRLSGESNGCQSRETENFEQQSLAPSYIYSGSESFSSSICSTDYVLPVSKELSGVSIKHENVHELSGEITNGGPTPSPANKESGSSHCLSGEEFVNPGPKSGVVENGNNNNHSRGNSIPVSNSGFNVLTTSHVNKLIEDLQSQSNEVQTKAAEELRLLTKDSIENRIIIGQCGAVMPLLSLLYSDKKLTQEHAVTTLLNLSINEDNKALIAEAGAIEPLVYVLKTGNNGAKENSAAALFSVSVIENYKEKIGRSGAVKALVNLLGSGTVRGKKDAATALFNLSIFHENKARIVQAGAVKYLVQLLDPADRMVDKAVALLANLSTIPEGQLAIAREGGIPSLVELVESGSPRGKENAASIVLQLCLHSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRSQREGATGKGKS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02774 787 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Bva04g02774 787 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Bva04g02774 787 MobiDBLite consensus disorder prediction 366 387 - -
Bva04g02774 787 CDD RING-Ubox_PUB 245 286 IPR045210 -
Bva04g02774 787 Coils Coil 502 526 - -
Bva04g02774 787 Gene3D - 495 680 IPR011989 -
Bva04g02774 787 MobiDBLite consensus disorder prediction 437 457 - -
Bva04g02774 787 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 624 666 IPR000225 GO:0005515
Bva04g02774 787 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 782 - -
Bva04g02774 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 315 IPR013083 -
Bva04g02774 787 MobiDBLite consensus disorder prediction 765 787 - -
Bva04g02774 787 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Bva04g02774 787 SUPERFAMILY ARM repeat 501 774 IPR016024 -
Bva04g02774 787 SMART arm_5 572 612 IPR000225 GO:0005515
Bva04g02774 787 SMART arm_5 654 693 IPR000225 GO:0005515
Bva04g02774 787 SMART arm_5 530 571 IPR000225 GO:0005515
Bva04g02774 787 SMART arm_5 694 734 IPR000225 GO:0005515
Bva04g02774 787 SMART arm_5 736 776 IPR000225 GO:0005515
Bva04g02774 787 SMART arm_5 613 653 IPR000225 GO:0005515
Bva04g02774 787 Gene3D - 682 780 IPR011989 -
Bva04g02774 787 PANTHER U BOX DOMAIN-CONTAINING 11 782 - -
Bva04g02774 787 Coils Coil 184 216 - -
Bva04g02774 787 SUPERFAMILY RING/U-box 239 316 - -
Bva04g02774 787 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 665 706 IPR000225 GO:0005515
Bva04g02774 787 Pfam Armadillo/beta-catenin-like repeat 533 570 IPR000225 GO:0005515
Bva04g02774 787 Pfam Armadillo/beta-catenin-like repeat 617 652 IPR000225 GO:0005515
Bva04g02774 787 Pfam Armadillo/beta-catenin-like repeat 572 607 IPR000225 GO:0005515
Bva04g02774 787 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02774 Bva-Chr4 23997033 24001551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02774 7 787 U-box Gene Family AT3G54790 54.806 0.0 745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02774 04 23997033 24001551 Bva04g02774 04 23997033 24001551 ECH