Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02771 ATGGGCCTCAGAGACGTTGGTGCCTCATTGCCTCCTGGTTTTCGGTTTTATCCGAGTGATGAGGAGTTGGTGTGTCACTACCTCTACAAAAAGATCGCAAATGAAGAAGTTCTTAAGGGAACTTTGGTGGAAATTGACTTGCATACATGTGAGCCCTGGCAGCTTCCTgAGGTGGCTAAGCTCAACGCAAATGAATGGTATTTCTTCAGTTTCCGTGATAGAAAATATGCTACAGGATTTCGGACCAATCGCGCAACGACATCTGGGTATTGGAAAGCAACAGGGAAGGATCGAACGGTGCTTGACCCAACCACAGGTGACGTCGTAGGAATGAGGAAGACGTTGGTGTTCTACAGGAACAGAGCTCCCAATGGAATCAAAACGGGTTGGATCATGCATGAGTTTCGTCTGGAGACCCCACACATGCCACCTAAGGAGGACTGGGTTTTGTGTAGAGTCTTTCACAAAAGCAAAACAGACAACAGTGCCAATCTCAGCCCACAACTCATGTATGAAAACACACCTTGCTCTAGCAGTACTCCATCCCTAACCAACCAAACCATGCCTTGTGGGCACAACCAAATTACCTCAATGACAACCCACCATCATCATCAAAATCGGAATAATAATTCTCTTGTCAATCTCCTTCAATTTTCCCTGGAAACAAACAACAACAGCTCTGTTACTCAGATTAGCCCTAAAGGTGATGATGGGTATGGCTTCTTTTGGGACGACATGGATCTGCAGGAAAATTGCTTGCAAAACGGTATCACCTCGAACTTGGATGGAATGAGATTCGAGAATGATAATAATAGCATGGTCTTGTTGTG 830 0.4518 MGLRDVGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPTTGDVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKTDNSANLSPQLMYENTPCSSSTPSLTNQTMPCGHNQITSMTTHHHHQNRNNNSLVNLLQFSLETNNNSSVTQISPKGDDGYGFFWDDMDLQENCLQNGITSNLDGMRFENDNNSMVLL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02771 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 273 - -
Bva04g02771 276 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Bva04g02771 276 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Bva04g02771 276 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Bva04g02771 276 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 273 - -
Bva04g02771 276 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02771 Bva-Chr4 23974280 23978287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02771 6 231 NAC Transcription Factor Family AT1G56010 47.034 6.57e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva04g02771 NAM 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02771 - - ccaj:109788642 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02771 04 23974280 23978287 Bva13g02682 13 19795089 19799231 BWGD
Bva04g02771 04 23974280 23978287 Bva04g02771 04 23974280 23978287 ECH