Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02747 ATGGACGATTCTGGCAAGAGTAGCAGTAATAACAACAAGAAAATCATGAACTCATGGGTGCTTCAATTTCAGAAAATGGGTCTTGAACTCAAGTGCCCTCTTTGTCTAAACTTGTTCAGTAGGCCGATGTTACTTCCTTGCAACCACATGTTCTGCAAGTCCTGCATATCTGATTGTCCAATGCCTGGATCACAGTGTGCTATTTGTAATACTCAGTATGCCCATAAAGATCTAAGGCAGATGCCTTTTGTTGAAAGCATGGTAACGATCTATAGAAGTTTGGATGTCACCTTTTCCGTCAATATGTTCCAGCAACTTTCTCCTGATGGCATGAGGATTTTGGAGCCATGCCAAGCATCGGGTTTACATCATTGTAATGAAGTCGGGATTGAcgagaataaaaaaagtgaaaggaGTGGCGTTGTAGTGCATGTAAAATCGGAGGAATGTTCGCAGCTGGAAGTCAGGGGCCATGAAGAGTATGGAGTTGtggaaatggaaatggaaacaAGTCAAGCGACACAATCGTTGCCAGACAGCCCTCCTTTTTGTGATACCAATGGTTCAGATAATGACTGCAGTGATCAAGACGGTGCACATATCTCGGTTGCTGTGAAATTGGAGAGTTCTTCATTGAAGAGAGCAAGCAAAGCAACTGGAAATTTGGAAGTAAGATCAGTGCGCTTAAGGTCTGATTCTGCTTCTAAAAGTGATGGTCTTATGAGGGAGctcaagaaacaaaagaatattaacCGTGGAGCATTGAACGCGAGCTTGAAATGTGACAATCACGTTCAAGTTCAGCCTAGTGTCTCACATCATAATAAATCAGTGGATTCCAGCTGTAAATTGGAACTTAAATCTGATACAGACACTGGTGAACTTCTGACAAAAATTCCGGACAATTCACATTCTAATACAAGCATCTGTTCATTTTGTCAATCCTCAAAAATCTCTGAGGCTACTGGGCCAATGTTGCATTATGCAAATGGGAATTTGGTTACAGGAGATGCAGCAATCCGACCAAATGTGATACATGTGCATGGAATTTGCATTGACTGGGCACCACAAGTGTATTTTGTTGGCGAATCTATCAAGAATTTGAAGGCGGAAGTGTCAAGAGGAGCAAAGCTTAAATGCAGCAAATGTGGTCTAAAAGGGGCTGCTCTTGGATGCTACGTCAAATCCTGTAGAAGAACTTATCATGTTCTTTGTGCAATGGAAATCTCAACTTGCCGTTGGGATCATGAGGACTTTCTTATGCTCTGTCCAGCTCATCGTCATGTCAGTTTCCCAAATGAGAAATCCAAGTTTAAGAAAGATGCCTCCAAAAAACATCCTGTAACATCTCATTTGGTTTCTCAGCCATCAAAACGTTCAGAAGCTTCAACTGGTGATTGCAAAAACTGGGTTTTTTGTGGATCTGCTCTATCTGCTGATGAAAAGAtacttttaatcaattttgcaAGTAGGATTGGTGCAACCGTGACTAAGTTCTGGACCCCAAAAGTCACACATGTGATTGCAGCAACCGATGCAAATGGTGCATGCTCCAGGACATTGAAGGTTCTTATGGCTATTTTGAATGGGCGATGGGTTCTTAAAATGGATTGGGCAAGAGCAAGCATGGAAGTAACACATCCTGTGGAGGAAGAACCATATGAAATTAGTCTTGACAACCATGGGTGCCATGGTGGCCCAAAAACTGGGAGGCTTCAGGCATTGGCCAATGAGCCCAAGCTACTCCGtggcttaaatttttatttttctggtgATTATATGCCGTTATATAAGAAAGATCTTGAGGACTTGGTTGTAGCAGGAGGAGGTTCTGTTTTGGGGAGCAAAGAGGAATTGGAAGCGAAAGGTCATGAACGCGAGGCAACTTCTTCAAAGCAGCTTGTCGTTTACAATCTGGATTCCCCACAAGGACGTATGTTGGGGGAGGAAGTTTCAATCCTTTGGCAGAGATTGAGTGAGGCAGAGGATTTAGCTGCTAAAACTGGTTCGCAGGTCATTGGTCATACATGGCTTTTGGAATCAATTGCTGCATGTAAGTTGCAGGCTTTTGTCAGCTA 2078 0.4105 MDDSGKSSSNNNKKIMNSWVLQFQKMGLELKCPLCLNLFSRPMLLPCNHMFCKSCISDCPMPGSQCAICNTQYAHKDLRQMPFVESMVTIYRSLDVTFSVNMFQQLSPDGMRILEPCQASGLHHCNEVGIDENKKSERSGVVVHVKSEECSQLEVRGHEEYGVVEMEMETSQATQSLPDSPPFCDTNGSDNDCSDQDGAHISVAVKLESSSLKRASKATGNLEVRSVRLRSDSASKSDGLMRELKKQKNINRGALNASLKCDNHVQVQPSVSHHNKSVDSSCKLELKSDTDTGELLTKIPDNSHSNTSICSFCQSSKISEATGPMLHYANGNLVTGDAAIRPNVIHVHGICIDWAPQVYFVGESIKNLKAEVSRGAKLKCSKCGLKGAALGCYVKSCRRTYHVLCAMEISTCRWDHEDFLMLCPAHRHVSFPNEKSKFKKDASKKHPVTSHLVSQPSKRSEASTGDCKNWVFCGSALSADEKILLINFASRIGATVTKFWTPKVTHVIAATDANGACSRTLKVLMAILNGRWVLKMDWARASMEVTHPVEEEPYEISLDNHGCHGGPKTGRLQALANEPKLLRGLNFYFSGDYMPLYKKDLEDLVVAGGGSVLGSKEELEAKGHEREATSSKQLVVYNLDSPQGRMLGEEVSILWQRLSEAEDLAAKTGSQVIGHTWLLESIAACKLQAFVS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02747 692 ProSiteProfiles BRCT domain profile. 471 556 IPR001357 -
Bva04g02747 692 Pfam RING-type zinc-finger 32 56 IPR027370 -
Bva04g02747 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 429 IPR013083 -
Bva04g02747 692 CDD BRCT_Bard1_rpt1 470 549 - -
Bva04g02747 692 Pfam PHD-like zinc-binding domain 348 427 - -
Bva04g02747 692 MobiDBLite consensus disorder prediction 448 463 - -
Bva04g02747 692 SUPERFAMILY RING/U-box 29 92 - -
Bva04g02747 692 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 13 689 IPR031099 GO:0006281|GO:0006974
Bva04g02747 692 MobiDBLite consensus disorder prediction 436 463 - -
Bva04g02747 692 Gene3D BRCT domain 467 572 IPR036420 -
Bva04g02747 692 ProSiteProfiles Zinc finger RING-type profile. 32 70 IPR001841 -
Bva04g02747 692 SUPERFAMILY BRCT domain 469 557 IPR036420 -
Bva04g02747 692 SMART BRCT_7 579 685 IPR001357 -
Bva04g02747 692 SMART BRCT_7 464 546 IPR001357 -
Bva04g02747 692 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Bva04g02747 692 SUPERFAMILY BRCT domain 581 688 IPR036420 -
Bva04g02747 692 Gene3D BRCT domain 577 692 IPR036420 -
Bva04g02747 692 ProSiteProfiles BRCT domain profile. 577 682 IPR001357 -
Bva04g02747 692 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 13 689 - -
Bva04g02747 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 102 IPR013083 -
Bva04g02747 692 ProSiteProfiles Extended PHD (ePHD) domain profile. 307 427 IPR034732 -
Bva04g02747 692 Pfam BRCA1 C Terminus (BRCT) domain 474 538 IPR001357 -
Bva04g02747 692 SMART ring_2 32 69 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02747 Bva-Chr4 23856098 23861928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02747 500 615 Core DNA Replication Machinery Family AT4G02110 31.405 7.69e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02747 K10683 - gmx:100784883 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02747 04 23856098 23861928 Bva04g02747 04 23856098 23861928 ECH