Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02740 ATGGCGCCCAATCCAAGAGTGACAAGAGCCTATCGTGCAATGAAAGTTCTTGGTATTGAGGAAGCAAAAGTAAAACCAGTGTTAAAGAGACTTCTTAAGCTGTATGATAAAAACTGGGAACTAATTGAAGAAGAGAACTACAGAGTTCTGATAGATACTATTTTTGAGGAGGAGGACGAAAATCAGGGAcagagagaggagagaaagaaagttgaTGAAGAAGATATGGCGGAGGATGAAGAAGCTCATATGCGTGATGAGCCTGTTCGACCGTTGAAGAGGTTACGTAGAGGCAGAGAGAATCGGGCTTCACAGCCTATGACTAGCTGTGGCCTCAGCCCCCCAGGTGCCTCTCCTATTAAACAGCTTAAAGTAGAAGAGGGTGCTTTGTCTGAAAGCTCTTCCAGGCAGCAGTCTCAGAACAAAGCGGTGTTGTCTCCATCTGATGTGGGACACGGGAGGATTGAAGTACGACATCTTCCTCCTCGAGATGGAATCATTGACAAGGGAAAGCAACCTCTATCACCTCAAGTTCCTGtgagaggaagagaaattatatCTGAAAGAGTGTCACCATCCATCCTCATTAAGAAACCAACAGTTGAATCAGGTTTCATGCCgatgccaaaaaagaaagtgccCCATACTCTCGCATTGATCATCCCCAAGGACGAGCCTGTTGATGAATTGCCCATTGATGAGGTTCCAATTGCAGTAATTCGTCCTGATTCAGTATGTGGTAGAGATTACCCAGTAGAGAATGGCCCTGCTGGAAAAAGGCTTGGCCATGAAGGCTTGCCATCAAAATACAGAGATAATGAAGTTAGAGGTAAAGATATCGTTGCTTCATCACATGAAGAGGAAGTGAACAGTGAGGTTGCAACAATCACACAAGAATGCTGTTCAAGTGTAGAGATAGCTTCCTCATCATTGGGAGAGGTAAAAATTTCTCTGAGCTGTGGCTCAGCTCTTGGGAGACCAGGTTTTCAGTTGCCTAGTCGAGATCAACTTCTAAAAACGATGGAGGATAAATGCCTGCaatcatataaaatcactGACCCAAAATTTTCTGTTGTGAATCTGTTGAGGGCTATGTGTGAGTACATCTCTGAATTGGGAACTTATTCAAATGATGAATCACAGGAAGCATCTGGAAAGATAACACCAAGGCTAGATATGCTGAAGGAATCTAGTGCACATGATGCATTGGGTGTCAAAGGCAATGAAGAAGATATGAGCTTGCCTTCTAGCAGTTCAAATGGCACAGTTAATGCTACTGCTGAAGTAGCATCTCGGATACCCGTTTCTCCACCTTGTCGGAGTGTTCTGGATTATGCTGGGCTTGCTTGCAAGAAGGTCAGAACAACTGATTTTACAGGGAGTGATAACAAAAGTGATCTGGATGATCCTAAATCTCCAAAATCTAGTAATTTGGTGGTTGCTACACAGCATCAGCTTACTCTACGTGATTTAACGTCTATTCATGATTGCAAGGACCTTACcaatggagaagaaaatgTCGGAATCACATGggcaaatgaaaataataacgAATTCCTGCCATCTTTTCACTATATCCCCCGCAACCTGGTGTTCCATGAAGCTGATGttaaattctctctttctcgaATTGGGGTCAAGGATTGTTGTTCATCTTGTTTGGGCAACTGTCTCTTGTCATCTACACCTTGTGCATGTGCAAATAAAACTGGGGGTGGATTTGCGTACACAGCAGAAGGTATGCTAAAGGAAGAATTCTTGGAAGAGTGCATTGCTATTAGTCGCAACTGTCAAGTACATAATTTCTATTGTAAAGACTGTCCGCTTGAAAGGTCAAAAAACGATGGCTTTGTGGAACAATGTAAAGGACACATGAAGAGGAAGTTTATCAAAGAATGCTGGGTCAAATGTGGCTGTGGGAAACAGTGTGGCAATAGAGTTGTCCAGCGAGGAATAACTTCCAAATTACAGGTGTTTTTCACTGCAGAAGGGAAAGGATGGGGTCTTTGTACGTTAGAGGACCTTCCAAAAGGTGCATTTGTGTGTGAGTTTGTTGGAGAGATATTAACCATTAAAGAGTTGCACAAGAGGAACGTGCAATGCGCCAAAAATGGCAAATGTGTATACCCAGTTCTACTGGATGCATGTTGGGATTCAGGAGATGTGAAGGATAAAGAAGCTCTTTGCTTGGATGCATCATCCTATGGGAATGTTGCTCGGTTCATTAATCACAGgTGTTCGGATGCAAACTTAATTGAGATCCCAGTTGAAGTGGATGCCCCAGATCACCATTACTATCATCTTGCCTTCTTCGCATCCAGAAAAATATCAGCACAGGAAGAGCTCACTTGGGATTATGGCATTGATCTTGATGACCGGGATCATCTTGTTAAGTCGTTCTTGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGAACAAACAGAAAAGAGATCCTTTA 2465 0.4093 MAPNPRVTRAYRAMKVLGIEEAKVKPVLKRLLKLYDKNWELIEEENYRVLIDTIFEEEDENQGQREERKKVDEEDMAEDEEAHMRDEPVRPLKRLRRGRENRASQPMTSCGLSPPGASPIKQLKVEEGALSESSSRQQSQNKAVLSPSDVGHGRIEVRHLPPRDGIIDKGKQPLSPQVPVRGREIISERVSPSILIKKPTVESGFMPMPKKKVPHTLALIIPKDEPVDELPIDEVPIAVIRPDSVCGRDYPVENGPAGKRLGHEGLPSKYRDNEVRGKDIVASSHEEEVNSEVATITQECCSSVEIASSSLGEVKISLSCGSALGRPGFQLPSRDQLLKTMEDKCLQSYKITDPKFSVVNLLRAMCEYISELGTYSNDESQEASGKITPRLDMLKESSAHDALGVKGNEEDMSLPSSSSNGTVNATAEVASRIPVSPPCRSVLDYAGLACKKVRTTDFTGSDNKSDLDDPKSPKSSNLVVATQHQLTLRDLTSIHDCKDLTNGEENVGITWANENNNEFLPSFHYIPRNLVFHEADVKFSLSRIGVKDCCSSCLGNCLLSSTPCACANKTGGGFAYTAEGMLKEEFLEECIAISRNCQVHNFYCKDCPLERSKNDGFVEQCKGHMKRKFIKECWVKCGCGKQCGNRVVQRGITSKLQVFFTAEGKGWGLCTLEDLPKGAFVCEFVGEILTIKELHKRNVQCAKNGKCVYPVLLDACWDSGDVKDKEALCLDASSYGNVARFINHRCSDANLIEIPVEVDAPDHHYYHLAFFASRKISAQEELTWDYGIDLDDRDHLVKSFLCRCGSKFCRNMKRTNRKEIL 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02740 821 SMART set_7 654 793 IPR001214 GO:0005515
Bva04g02740 821 Pfam Pre-SET motif 501 646 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva04g02740 821 CDD SET_SETDB-like 521 787 - -
Bva04g02740 821 Gene3D SET domain 500 812 IPR046341 -
Bva04g02740 821 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 818 - -
Bva04g02740 821 MobiDBLite consensus disorder prediction 61 101 - -
Bva04g02740 821 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Bva04g02740 821 SMART preset_2 497 638 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva04g02740 821 ProSiteProfiles Pre-SET domain profile. 549 651 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bva04g02740 821 SUPERFAMILY SET domain 507 810 IPR046341 -
Bva04g02740 821 Coils Coil 54 74 - -
Bva04g02740 821 Gene3D - 1 60 IPR043017 -
Bva04g02740 821 MobiDBLite consensus disorder prediction 58 156 - -
Bva04g02740 821 Pfam SET domain 666 787 IPR001214 GO:0005515
Bva04g02740 821 MobiDBLite consensus disorder prediction 128 146 - -
Bva04g02740 821 ProSiteProfiles SET domain profile. 654 787 IPR001214 GO:0005515
Bva04g02740 821 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 820 IPR025776 -
Bva04g02740 821 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02740 Bva-Chr4 23828416 23833602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02740 630 787 C2H2 Transcription Factor Family AT2G23740 44.375 5.69e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva04g02740 Pre-SET 1.4e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g02641 13 19583357 19590977 Bva04g02740 04 23828416 23833602 BWGD
Bva04g02740 04 23828416 23833602 Bva04g02740 04 23828416 23833602 ECH