Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02701 ATGGATGATGATGAGTACCCAATACCCACTTTTTCTCGGTTAACTCGCCTGAAGAAGCCCTCCGTGCCGGATGACGATATCATGGAGTTATTATGGCAAAACGGCCAGGTGGTGTTGCAGAGTCAGAACCAACGATCTCTCAAGAAACCGCCGCCGGCGGGACCTTCTACGGCGAGGGAGATTCGGACCTCGCAACATGAAGCGGAAAACTACCACAACCAAAATCTTCTGATGCAAGAAGATGAAATGACTTCCTGGCTTCACTATCCCATCGTTGATTTGAATCCCTTGGATCAAAATTTTTGCGCCGACCTGCTTTACCCGCCTTCCACTgttaacaacaacaacaacagtaCCATGCAGACCCCTGCCCGCACATCTCAGGTATCGGAGCTCCAGAATCCGCAGAGGTCGGTGGCTCCGCGTCCGCCAATACCGCCTACAAGGAGAACTGAGCAGGTGCAGACGAGGATTCAGAACTTCGCTCACTTTTCAAAGCACAATGTGAGAGTTCAACCAGGGCCTTCAAATTCAAAGGCTGTAGTGAGGGAATCAACGGTGGTAGATTCAAGCATCACGCCGAATGTGGCGGCGGATTCCACGGCCTCGGAGACCGTAAGAAGCACGACGGAGCCAACGGACAGAGATGGCGGCGGGGCGAGCATGAGCAGTGCTGCAATAGCGGCACCTTCCACTGGCGGATGTACAGGAGGGAAGGAAGTGATGACGTGCGAGATGACAGTGACGTCATCTACTGGAGGTTCGAGTGGCAGTGGTGAAGCGGCTCACCGACTGGAGACTGAGAATCGGAAACGGAAGGGTCGGGAACTCGACGATTCCGAGTGCCAAAGCGAGGATGTTGATTTTGAATCTGCGgacgcaaaaaaaaaagttcgtGGATCAACTTCTACCAAGAGATCTCGTGCTGCAGAGGTCCATAATCTTTCAGAGAGGAGGCGTCGAGATAGGataaatgaaaagatgaaAGCTTTGCAAGAACTTATACCTCGGTGCAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCTCTGCAGTTACAAGTACAGATGATGTCCATGGGATGTGGCATGGTCCCTATGATGTATCCGGGAATTCAACAGTATATGCCACCAATGGGAATGGGGATAGGGATGGGTATGGGCATGAACAGGCCAGTAATGCCATTTTCCAGTATGTTAGCAGGTTCGGCTTTGCCTGCGGCTACTGCAGCTGCACATTTGGGACCAAGATTTCCTATTCCTCCTTTCCACATGCCTCATGTTCCTGCACCTGATTCATCCAGAATGCAAGCAGCACAGCAGTCAGATCATATGCTTGCATCACTTGGGGCACCTGATCCAAATCAGTCACGGATCCCAAACTTCACTGATCCTTATCAGCAGTACCTTATTCCCCACCAGATGCAGTTACAACTAATGCAGAGTCAGGCAATAAACCAAGCGAATGTCAGCCAGGCAATAAACCAAGCGAATATCAGCAAGCCAAGTAGCAGTAAGAAGCAGGACAATCCAGAAAATCATCAGTCAGGAGGAATATG 1577 0.4883 MDDDEYPIPTFSRLTRLKKPSVPDDDIMELLWQNGQVVLQSQNQRSLKKPPPAGPSTAREIRTSQHEAENYHNQNLLMQEDEMTSWLHYPIVDLNPLDQNFCADLLYPPSTVNNNNNSTMQTPARTSQVSELQNPQRSVAPRPPIPPTRRTEQVQTRIQNFAHFSKHNVRVQPGPSNSKAVVRESTVVDSSITPNVAADSTASETVRSTTEPTDRDGGGASMSSAAIAAPSTGGCTGGKEVMTCEMTVTSSTGGSSGSGEAAHRLETENRKRKGRELDDSECQSEDVDFESADAKKKVRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMYPGIQQYMPPMGMGIGMGMGMNRPVMPFSSMLAGSALPAATAAAHLGPRFPIPPFHMPHVPAPDSSRMQAAQQSDHMLASLGAPDPNQSRIPNFTDPYQQYLIPHQMQLQLMQSQAINQANVSQAINQANISKPSSSKKQDNPENHQSGGI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02701 525 Gene3D - 303 366 IPR036638 GO:0046983
Bva04g02701 525 MobiDBLite consensus disorder prediction 505 525 - -
Bva04g02701 525 SMART finulus 314 363 IPR011598 GO:0046983
Bva04g02701 525 MobiDBLite consensus disorder prediction 263 280 - -
Bva04g02701 525 MobiDBLite consensus disorder prediction 41 60 - -
Bva04g02701 525 CDD bHLH_AtPIF_like 308 371 - -
Bva04g02701 525 MobiDBLite consensus disorder prediction 192 217 - -
Bva04g02701 525 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 523 - -
Bva04g02701 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 386 IPR036638 GO:0046983
Bva04g02701 525 MobiDBLite consensus disorder prediction 248 317 - -
Bva04g02701 525 MobiDBLite consensus disorder prediction 111 149 - -
Bva04g02701 525 MobiDBLite consensus disorder prediction 111 137 - -
Bva04g02701 525 Coils Coil 314 334 - -
Bva04g02701 525 MobiDBLite consensus disorder prediction 192 236 - -
Bva04g02701 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Bva04g02701 525 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 13 523 IPR031066 -
Bva04g02701 525 MobiDBLite consensus disorder prediction 288 317 - -
Bva04g02701 525 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02701 Bva-Chr4 23613588 23618294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02701 3 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 44.032 1.25e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva04g02701 HLH 6.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02701 - - gmx:100797225 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02701 04 23613588 23618294 Bva13g01811 13 15023084 15033870 BWGD
Bva04g02701 04 23613588 23618294 Bva04g02701 04 23613588 23618294 ECH