Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02690 atggcgACAAGCTCAAGCCTGGACATGTCTTTGGACGATATCATCAGGTCGAACAAGCAGAAAACTCGAGGAAGCAATTCCAGGGACAGAGCACCGCGCAGTTCCGGGCCATCTCGCCGGATCCCAAATCGCTTTACCAACCGAACCACACCGTACGCCAAGCCCTTTCATGATGCTGCTTCAACCTGGCAGCACGACATGTTTATGGAGGATGCCGCTGCCTTTTCCCCACACGCTGCTCGATTCTCTTCTAATTCCAACGAGGCTGGCATCAAGGTCTTGATCTCTAACCTCGACTATGGGGTCTCCGATGAAGACATCAAGGAGCTCTTTTCTGAGGCTGGTGATGTAAAACGATATGCCGTTCATTATGATAGAAGTGGAAGATCAAAGGGAACTGCTGAAGTTGTCTATTCTCGGCGAGTGGATGCTCTTCAAGCTGTCAAGAAGTATAACAATGTTCAATTAGATGGGAAGCCAATGAAAGTCGAGATTGTTGGGCAAAGAAATATTCCTTTTCAAACTCCTGCTCATGGTCCAGCTACCAATGCCATGTATGATAGTGGTGTTCGAATAAGTGGACAAGCAAGGACTGGCGCCGCAGGACAACCCCGTGGCAGTGGCCGTGGCAGGAGGGGGCGTGGAGGGAATAGAAACCATGCTGAGAAGGTTTCTGCAGAAGATCTTGATGCTGATTTGGATAAATACCATGCTGAAGGCATGGAAACTAATTA 734 0.485 MATSSSLDMSLDDIIRSNKQKTRGSNSRDRAPRSSGPSRRIPNRFTNRTTPYAKPFHDAASTWQHDMFMEDAAAFSPHAARFSSNSNEAGIKVLISNLDYGVSDEDIKELFSEAGDVKRYAVHYDRSGRSKGTAEVVYSRRVDALQAVKKYNNVQLDGKPMKVEIVGQRNIPFQTPAHGPATNAMYDSGVRISGQARTGAAGQPRGSGRGRRGRGGNRNHAEKVSAEDLDADLDKYHAEGMETN 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02690 244 SMART rrm1_1 92 164 IPR000504 GO:0003723
Bva04g02690 244 Pfam C-terminal duplication domain of Friend of PRMT1 193 238 IPR025715 -
Bva04g02690 244 CDD RRM_THOC4 92 165 - -
Bva04g02690 244 SMART FoP_duplication_2 169 244 IPR025715 -
Bva04g02690 244 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 4 242 - -
Bva04g02690 244 MobiDBLite consensus disorder prediction 195 244 - -
Bva04g02690 244 MobiDBLite consensus disorder prediction 215 244 - -
Bva04g02690 244 Gene3D - 76 226 IPR012677 -
Bva04g02690 244 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 4 242 - -
Bva04g02690 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Bva04g02690 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Bva04g02690 244 MobiDBLite consensus disorder prediction 1 53 - -
Bva04g02690 244 SUPERFAMILY RNA-binding domain, RBD 34 165 IPR035979 GO:0003676
Bva04g02690 244 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02690 Bva-Chr4 23574167 23576948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02690 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 3.75e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02690 K12881 - nnu:104594587 245.743