Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02688 ATGGCGGCATCGAGGCGCCTCCGGGACATGCAAGCCCAAGCGGCGAACAAGATCTGCGTTGATTGTTCCCAGAAGAACCCTCAATGGGCTTCCGTTTCATATGGAGTTTTCATGTGCTTGGAGTGCTCCGGCAAGCATCGCGGGCTTGGTGTTCATATCTCCTTCGTTCGATCTGTCACCATGGACTCTTGGTCCGAGATCCAGATCAAGAAAATGGAAGTTGGTGGTAATGAACAGCTCAACGCCTTCCTCGCGCAGTATGGGATCCCCAAGGAGACCGATATTGTTACTAAGTATAATAGCAATGCTGCCAGCATATACAGGGATCGGATTCAGGCCCTTGCTGAGGGTCGAGCATGGCGGGATCCACCGGTCGTCAAGGAGAACCTTGGCTCTGGCAAGAGTAAGCCCCCTTTGGCGCAAAGCAGTTCCAGGAGTAATGGGGGGTGGGATAATTGGGACAACGATGATGGGTTCAAATCTACCAATGACATCAGGCGAAACCAATCGACGGGGAATTTTAGGGCGGCGAATGGTGGTGGCGCCGGAGGCGTTCCCTCGAGATCAAGGTCCACTGAGGATATCTATACGCGCGCGCAATTGGAGGCCTCCGCTGCTAATAAGGATGGCTTTTTCTCGCGGATGATAGCCGAAAATGAATCACGACCCGAAGGGATTCCACCCTCACAAGGAGGCAAGTATGTGGGCTTCGGGTCTTCTCCAGCGCCTTCCCAGAGGAATAATAATCCAGAAAACGATGTTTTCTCTGTTGTTTCTCAGGGATTTGGTAAATTATCTTTAGTTGCTGCCTCTGCAGCTCAGTCTGCTGCTAATGTTGTTCAACAAGGCACCAAGGACATCTCTGCTAAGGTAAGAGATGGTGGTTATGATCACAAGGTCAATGAAACTGTCAATGTTGTCACTCAGAAGACATCGGAGATTGGACAAAGGACATGGGGGATCATGAAGGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAATACACTAgagaaaactcaaatttgaaGCCTGATAATTGgcaaggaaatgaaaatggtaGAAATGGTCGTTATCAGGATTTCAATCAAGAGAATAAAGGCTGGAATTCTTCTACCAGCAGAGGGCATTCTTCATCAGATGGGCAATCTAATACTTACAGCTCAAGCCCTTGGGATAATTGGGACCACAAAGATACTAGGAAGGAAGAAACAGCAAATGGGTTTGCTCCCTATTCATCAGGTGGGCAGTTCAATACTTACAACTCCAGCTCTTGGGATGACTGGGACCACAAAGATACTAGGAACGAAGAACCAGCTAAAGGATCAGCTCCCCACAATAATGATTCTTGGGCTGGCTGGGACGACGATGCCAAAGATGGTGGATATGATAATTTCTATGACAATGCATCTAATAAAAAAGCTGTTGGTCACAATGGGAAATCAGATGCCACCTGGACAGGAGGAGGCTTTCTCTA 1478 0.4756 MAASRRLRDMQAQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEVGGNEQLNAFLAQYGIPKETDIVTKYNSNAASIYRDRIQALAEGRAWRDPPVVKENLGSGKSKPPLAQSSSRSNGGWDNWDNDDGFKSTNDIRRNQSTGNFRAANGGGAGGVPSRSRSTEDIYTRAQLEASAANKDGFFSRMIAENESRPEGIPPSQGGKYVGFGSSPAPSQRNNNPENDVFSVVSQGFGKLSLVAASAAQSAANVVQQGTKDISAKVRDGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMALASQKVEEYTRENSNLKPDNWQGNENGRNGRYQDFNQENKGWNSSTSRGHSSSDGQSNTYSSSPWDNWDHKDTRKEETANGFAPYSSGGQFNTYNSSSWDDWDHKDTRNEEPAKGSAPHNNDSWAGWDDDAKDGGYDNFYDNASNKKAVGHNGKSDATWTGGGFL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02688 492 MobiDBLite consensus disorder prediction 426 442 - -
Bva04g02688 492 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Bva04g02688 492 MobiDBLite consensus disorder prediction 342 393 - -
Bva04g02688 492 CDD ArfGap_ArfGap1 3 117 - -
Bva04g02688 492 SUPERFAMILY ArfGap/RecO-like zinc finger 5 117 IPR037278 -
Bva04g02688 492 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Bva04g02688 492 MobiDBLite consensus disorder prediction 135 151 - -
Bva04g02688 492 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 407 - -
Bva04g02688 492 MobiDBLite consensus disorder prediction 410 425 - -
Bva04g02688 492 MobiDBLite consensus disorder prediction 337 492 - -
Bva04g02688 492 MobiDBLite consensus disorder prediction 220 249 - -
Bva04g02688 492 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 412 492 - -
Bva04g02688 492 MobiDBLite consensus disorder prediction 124 193 - -
Bva04g02688 492 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 412 492 IPR044519 GO:0005096|GO:0016192
Bva04g02688 492 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Bva04g02688 492 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Bva04g02688 492 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Bva04g02688 492 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Bva04g02688 492 Pfam Putative GTPase activating protein for Arf 5 100 IPR001164 GO:0005096
Bva04g02688 492 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 407 IPR044519 GO:0005096|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02688 Bva-Chr4 23565875 23568855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02688 5 153 C2H2 Transcription Factor Family AT4G21160 37.086 1.16e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02688 K12492 - gmx:100806519 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02688 04 23565875 23568855 Bva13g01826 13 15096899 15100925 BWGD
Bva04g02688 04 23565875 23568855 Bva04g02688 04 23565875 23568855 ECH