Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02673 ATGAAGAGACATAACGAAGCAATAATCGGGAGCTTTGATTTGGCAAATTGTCTAATGCTTCTGTCTCAACAAAGAAAAGTGCCCCAGGAAAGTTATAGCCCTGAAGAGTTTGAGTGCAAGACGTGCAACCGCAAGTTCTCGTCTTTTCAAGCTCTTGGTGGCCACAGGGCTGGCCACAAGAGGCAGAAGCTAGATGGGGACCAACTCCATGCACAAGCCAAATCTCTGACTCTGAGCTTGCCAAATAACAAGCCCAAGATGCACGAGTGCTCTATTTGTGGCCTCGAATTCTCTCTTGGCCAGGCACTGGGAGGCCACATGAGGAGGCATAGAGCTGCCAACGAGGAAGCCTTTCAGTCTGTAAACCAGCTTGTTGCTAAATCTCCAGTTCTCAGGAGATCCAACAGTACGAGGGTTTTGTGCTTGGATCTGAACTTGACACCTTTCGAGAATGATTTGAAGTTATTGTTTGGAAATATGGCACCTAAAATTGAAGCCTTCGTCTG 506 0.4704 MKRHNEAIIGSFDLANCLMLLSQQRKVPQESYSPEEFECKTCNRKFSSFQALGGHRAGHKRQKLDGDQLHAQAKSLTLSLPNNKPKMHECSICGLEFSLGQALGGHMRRHRAANEEAFQSVNQLVAKSPVLRRSNSTRVLCLDLNLTPFENDLKLLFGNMAPKIEAFV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02673 168 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Bva04g02673 168 Pfam C2H2-type zinc finger 88 112 - -
Bva04g02673 168 Pfam C2H2-type zinc finger 37 62 - -
Bva04g02673 168 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Bva04g02673 168 SUPERFAMILY beta-beta-alpha zinc fingers 37 110 IPR036236 -
Bva04g02673 168 Gene3D Classic Zinc Finger 74 138 - -
Bva04g02673 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Bva04g02673 168 SMART c2h2final6 88 110 IPR013087 -
Bva04g02673 168 SMART c2h2final6 37 59 IPR013087 -
Bva04g02673 168 PANTHER ZINC FINGER PROTEIN ZAT5 2 163 - -
Bva04g02673 168 Gene3D Classic Zinc Finger 34 57 - -
Bva04g02673 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Bva04g02673 168 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02673 Bva-Chr4 23488722 23489228 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02673 6 165 C2H2 Transcription Factor Family AT2G37430 47.337 8.06e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02673 zf-C2H2_6 5.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02673 - - aprc:113870747 220.32