Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02672 ATGCTGCTGTCTCGAGCACCAGAAAACAAGGCCCGGACAAGTTTAGCAGCTGAACAAGTATTTGAGTGCAAGAGCTGCAACCGCAAGCTCTCATCGTTTCAGGCTCTTGGTGATCATAGAGCCAGTCAGAAGAGACCCAAACTAGAGGCAGGGAACCGACTAAAACTGCATCCAAAACCTCTTAACTTGAGGATTAATAAACCCAAAATGTATCCATGCTCAATTTGTGGCCTTGAATTCTCTCTGGGCCAAGCACTGGGTGGCCACACGAGGAAGCACAGAGTTCCCATTATTGAAGAAGGTTTCCAGCCTATGAACCAACTGGTTGCAGAAATCCCAGTTTTAAAAAGATCCAACAGTGCTCGTTTAGACTTGAACTTGACACCTCTAGAGaatgatttgaatttattgtttgCGAAGATGGCATCTAAAGttcatctttctttgttgta 452 0.4204 MLLSRAPENKARTSLAAEQVFECKSCNRKLSSFQALGDHRASQKRPKLEAGNRLKLHPKPLNLRINKPKMYPCSICGLEFSLGQALGGHTRKHRVPIIEEGFQPMNQLVAEIPVLKRSNSARLDLNLTPLENDLNLLFAKMASKVHLSLL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02672 150 PANTHER ZINC FINGER PROTEIN ZAT5 11 144 - -
Bva04g02672 150 Gene3D Classic Zinc Finger 18 93 - -
Bva04g02672 150 Pfam C2H2-type zinc finger 71 94 - -
Bva04g02672 150 Pfam C2H2-type zinc finger 20 45 - -
Bva04g02672 150 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Bva04g02672 150 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 144 - -
Bva04g02672 150 SUPERFAMILY beta-beta-alpha zinc fingers 20 93 IPR036236 -
Bva04g02672 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02672 Bva-Chr4 23485823 23486275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02672 21 140 C2H2 Transcription Factor Family AT3G53600 51.220 4.24e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02672 zf-C2H2_6 6.1e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02672 - - aprc:113870747 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02672 04 23485823 23486275 Bva13g01845 13 15204711 15205365 BWGD