Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02671 ATGGCCATCAAGAgacagagagaaaatgaagcaaCAGAGAGGTTTGATTTGGCAAATTCTCCGTTGTTGCTCTCTGAAGCCAGAGACAGCAAAACCCAGAGAGGTTCAGCCCCAGATCAAGTATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCTTCGTTTCAAGCGCTGGGTGGGCACAGGGCTAGCCACAAGAAGCCAAAACTAAATGGGGAAGACCTGAAAGTAGTGGCTAAGTTTCTGAGCTTAGGAAACAAACCCAAGATGCATGAATGCTCCATTTGTGGTCTTGAATTTTCTCTGGGTCAAGCACTGGGAGGCCACATGAGAAAGCACAGAGATGCTGCCAGCAACCAAGACCTTTCTAAGATAAATCAGATCGCTGCTAAAGTCCCGGTTCTGAAAAGATCCAACAGTAAGAGGATTTCCTGCTTGGACCTCAACTTGACGCCATTGGAGAATGATTTGAAGTTACTGTTTGGAGAAAAGGCACCTCAAGTTCATCTTTCTTTGATGATATG 521 0.4415 MAIKRQRENEATERFDLANSPLLLSEARDSKTQRGSAPDQVFECKTCNRKFSSFQALGGHRASHKKPKLNGEDLKVVAKFLSLGNKPKMHECSICGLEFSLGQALGGHMRKHRDAASNQDLSKINQIAAKVPVLKRSNSKRISCLDLNLTPLENDLKLLFGEKAPQVHLSLMI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02671 173 Gene3D Classic Zinc Finger 70 141 - -
Bva04g02671 173 Gene3D Classic Zinc Finger 39 62 - -
Bva04g02671 173 SUPERFAMILY beta-beta-alpha zinc fingers 41 112 IPR036236 -
Bva04g02671 173 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Bva04g02671 173 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 166 - -
Bva04g02671 173 PANTHER ZINC FINGER PROTEIN ZAT5 3 166 - -
Bva04g02671 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Bva04g02671 173 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Bva04g02671 173 SMART c2h2final6 42 64 IPR013087 -
Bva04g02671 173 SMART c2h2final6 90 112 IPR013087 -
Bva04g02671 173 Pfam C2H2-type zinc finger 41 67 - -
Bva04g02671 173 Pfam C2H2-type zinc finger 90 114 - -
Bva04g02671 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02671 Bva-Chr4 23483796 23484526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02671 3 173 C2H2 Transcription Factor Family AT2G37430 46.409 5.19e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02671 zf-C2H2_6 9.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02671 - - aprc:113870747 237.269