Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02659 ATGGGAAACGCACACGGCCACCGCAAACACCGTTACCCCCTTCCTCAGAACCCTGGTCCTATATATGCTCCACCTGCTCATCCACAAATCCCAAGCTCGGCTTATCCAAGTACAACTCAGAGTCAGAGTAGCTCCAAAATGTTGTCTTTGCCTTACGCTCACGTGGACTCCAGCCTACGAGCCCTCTCCGGTCAGGCCGAAGGGTTTGGCCGCTTTGCGATCGGTGGGCTTCACGGCCCCCTTCATAAAGTCACAACTTTAGCAGATGATGGACCTGGATCACTACGTGAAGCATGTCGTAGGAAAGAACCCCTATGGATTGTCTTTGAAGTATCAGGCACTGTTCATCTATCGTCTTACTTGAGTGTGTCATCTTACAAAACCATTGATGGGCGTGGCCAAAGGGTTAAACTCACTGGAAAAGGTTTGCGGCTCAAGGAATGTGAACATGTAATAATATGCAATTTAGAGTTTGAAGGTGGTCGAGGACATGATGTTGATGGCATTCAAATCAAACCTAATTCAAAGCACATATGGATAGACCGATGCAGTCTTCGAGATTTTGATGATGGATTGATAGATATCACTCGACAAAGTACAGATATCACTATTTCTAGATGTCATTTTTCTCAACATGACAAAACAATGCTCATTGGGGCTGATCCCTCTCACACCGGTGATAGATGCATCAGAGTAACCATTCATCATTGTTTTTTTGATGGGACCCGACAACGGCATCCTCGTGTTAGATATGGAAAAGTACATCTGTATAATAATTACACCAGAAACTGGGGTATATATGCTGTTTGTGCTAGTGTGGAAGCACAGGTGTACTCACAATGTAATATCTATGAAGCAGGACAGAAGAAGGTGGCATTTAAGTATCTTCCTGAAAAGGCAGCAGACACGGAGGTGACAGCAGCTGGTCAAATAATGTCTGAAGGAGACTTATTTGTTACTGGAActcaacatggtttaatgACTGAGAGTGTTGGATGTGGCACCTTCCATCCTAGTCAATATTATCAGACATGGACAGTGGAACCTCCAACACATGAGCTGAAACAGATTCTCCAGCACTACACTGGATGGCAATCTGTTGCGCGCCCCGCAGATCATCAACCAATGGTTGCTTA 1136 0.4454 MGNAHGHRKHRYPLPQNPGPIYAPPAHPQIPSSAYPSTTQSQSSSKMLSLPYAHVDSSLRALSGQAEGFGRFAIGGLHGPLHKVTTLADDGPGSLREACRRKEPLWIVFEVSGTVHLSSYLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRQSTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVEAQVYSQCNIYEAGQKKVAFKYLPEKAADTEVTAAGQIMSEGDLFVTGTQHGLMTESVGCGTFHPSQYYQTWTVEPPTHELKQILQHYTGWQSVARPADHQPMVA 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02659 378 PANTHER PECTATE LYASE 44 370 - -
Bva04g02659 378 Pfam Pectate lyase 121 283 IPR002022 -
Bva04g02659 378 PRINTS Pollen allergen Amb family signature 245 264 IPR018082 -
Bva04g02659 378 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Bva04g02659 378 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Bva04g02659 378 MobiDBLite consensus disorder prediction 17 31 - -
Bva04g02659 378 MobiDBLite consensus disorder prediction 1 42 - -
Bva04g02659 378 Gene3D - 52 362 IPR012334 -
Bva04g02659 378 SMART amb_all 92 290 IPR002022 -
Bva04g02659 378 PANTHER PECTATE LYASE 18-RELATED 44 370 IPR045032 GO:0030570
Bva04g02659 378 SUPERFAMILY Pectin lyase-like 64 371 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02659 Bva-Chr4 23427712 23430985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02659 87 373 Polysaccharide Lyase AT3G55140 78.049 2.12e-173 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02659 K01728 - tcc:18597629 608.986