Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02643 ATGGAAGAAACAGAAACTATCATGGCTGCACTCTCAACCCTCACTCCTGCCCAACTCTCAGATCTAACCCGTTCCATTCTCTCCGCCACCCTCCGCCACCAACGCCGCCTCTCCTCCCTTCTCTCCTCCCCAACCCTCTTTTCCTTGACCCTTCATTATCTCCACAAACTCTCATTGTCACAAAAGGCCCTCCTTATTGCTCGCCACCTTATTTCATCTCTGCACCTCTTCACCCACCACTTCCAACCCAGCAAAGCCGTATCAGCGCCACCCTTATCCACTGCCATCAGACAGCGTGAACTCGACGCCGTTTTGCTACTCCTCTTACTCTGCGAAACCCACCAACACAGCCCAAAAGCTATTGAAGCACCCTATTCAGCTTGGCGTGAAAATTTAACCAATCTCTTTTCCGAGACATTGTTAACGGTCTCTTCTTCTAGCATTGGGGCATGTACTGCCACGATTTTGATTCCTTACATTGAGATGGTGACGCGGTGCCGGAGATTCATGGGTTTAATGGGATGTGGGGGTAGCAATGGAGAAAAGGAACCGGCGGAAGTGGCGGCTGCGGCGACGGCAGTTGTGGCGCTGCCAGCGGTGGAGGTGACAGTCGGCGGAACAGAGTGTGTGATATGTAAAGAGGAGATGCGAATTGGGAGGGATGTCTGTGAGTTGCCATGTCAGCACTTGTTTCATTGGACATGTGTCTTACCGTGGCTGAGCGAGAGGAACACGTGTCCGTGCTGCAGGTTTCGGTTACCGTCCGATGATGTATTCCAAGAGATCGAACGGCTCTGGGAGGTCTTGGTTAAAATGGGTGGCAGAGAGCCGTGCGATTG 839 0.5244 MEETETIMAALSTLTPAQLSDLTRSILSATLRHQRRLSSLLSSPTLFSLTLHYLHKLSLSQKALLIARHLISSLHLFTHHFQPSKAVSAPPLSTAIRQRELDAVLLLLLLCETHQHSPKAIEAPYSAWRENLTNLFSETLLTVSSSSIGACTATILIPYIEMVTRCRRFMGLMGCGGSNGEKEPAEVAAAATAVVALPAVEVTVGGTECVICKEEMRIGRDVCELPCQHLFHWTCVLPWLSERNTCPCCRFRLPSDDVFQEIERLWEVLVKMGGREPCD 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02643 279 Pfam Ring finger domain 208 250 IPR001841 -
Bva04g02643 279 SMART ring_2 209 249 IPR001841 -
Bva04g02643 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 279 - -
Bva04g02643 279 SUPERFAMILY RING/U-box 204 257 - -
Bva04g02643 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 4 279 - -
Bva04g02643 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 256 IPR013083 -
Bva04g02643 279 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02643 Bva-Chr4 23368370 23369564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02643 2 271 C3H Transcription Factor Family AT5G02750 48.387 8.74e-84 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02643 - - pvu:PHAVU_007G161400g 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02643 04 23368370 23369564 Bva04g02643 04 23368370 23369564 ECH