Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02629 ATGCCGCCCAAGCAGCAAAAAGCTGATTTAGCCAAGAAGCAGAAGGTCGTTGAAGATAAAACCTTCGGTCtcaaaaacaagaacaaaagcaaaaatgtTCAGAAATACGTTCAGAGCCTCAAGCAATCTGTACAGCCCAAGCCTGATCCTTCCAAAGTCGCTGCCAAGaaaaagaaggaagaagataaGGCTAAGGAGAAGGAGCTAAATGATTTGTTCAAAATCGCAGTCAGCCAACCTAAAGTTCCCGCTGGTGTTGATCCCAAGTCCATCGTATGTGAGTTTTTTAAAGTGGGACAGTGCACCAAGGGCTTTAAGTGCAAGTTCTCGCATGATTTGAATGTCCagaggaaaggagaaaagattGATATTTACAGTGATAAGCGCGACCAGGAAACGATGGAGGATTGGGATCAAGAGACACTGGAGAAGGTCGTGgagtcaaagaaaaatgagtatCAGCAGAACAAACCAACTGATATTGTCTGTAAATACTTTTTGGAAGCAGTGGAGAAAAAGCAATATGGTTGGTTTTGGGTCTGCCCTAATGGTGGTAAGAACTGTCACTATAGACATGCTCTCCCCCCTGgatatgttttaaaatctCAAATGAAGGCTCTGTTAGaggaagaaagtgaaaaaatacCAATTGAGGAGGAAATAGAAAATCAGCGTTCCAAGTTGACTATTTCAACTCCTATGACCCCTGATTTATTCAtgcaatggaagaagaagaagatagaagAAAGAGATGCCAATTTGGCTGCCCAACAAGCTGAGAGGGCTAAGAATGATCGCATGAGTGGTCGTGAGCTGTTTTTGTCAGATGCTAGTTTATTTGTGGATGATGCCGAGGCATATGACAAATACCAAAGAGAGCCAGAACAGGATGACAATGAACGGGCGGATGGAAATGCTACTGGAGATGGTCTGAGCACCTCAACAACAGCTGATGCCGATGCTGAAGTTCTTCCTGATGAGGACGACGATGATGAACTGGACATAGATGAGTTGAATGAATTGGAAGCTAGTTTATCAAAGACATCAATCCAAATAAAGGAGCCAGGAGCTGAAGCTTA 1079 0.3855 MPPKQQKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDPSKVAAKKKKEEDKAKEKELNDLFKIAVSQPKVPAGVDPKSIVCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKNEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKIPIEEEIENQRSKLTISTPMTPDLFMQWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPEQDDNERADGNATGDGLSTSTTADADAEVLPDEDDDDELDIDELNELEASLSKTSIQIKEPGAEA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02629 359 MobiDBLite consensus disorder prediction 290 304 - -
Bva04g02629 359 MobiDBLite consensus disorder prediction 290 331 - -
Bva04g02629 359 Gene3D - 204 278 - -
Bva04g02629 359 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Bva04g02629 359 MobiDBLite consensus disorder prediction 38 65 - -
Bva04g02629 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 358 - -
Bva04g02629 359 SUPERFAMILY CCCH zinc finger 88 112 IPR036855 GO:0046872
Bva04g02629 359 ProSiteProfiles Zinc finger C3H1-type profile. 157 195 IPR000571 GO:0046872
Bva04g02629 359 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Bva04g02629 359 SMART c3hfinal6 157 194 IPR000571 GO:0046872
Bva04g02629 359 MobiDBLite consensus disorder prediction 51 65 - -
Bva04g02629 359 Coils Coil 245 265 - -
Bva04g02629 359 Gene3D - 86 203 - -
Bva04g02629 359 Pfam DRG Family Regulatory Proteins, Tma46 214 295 IPR032378 -
Bva04g02629 359 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02629 Bva-Chr4 23303079 23306651 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva04g02629 DFRP_C 8.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02629 - - gmx:100806617 560.836