Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02625 ATGGCAGCCTCGGCGCCCACTGATGGGTCTGGGAAAAAGGTGAGAAAGCCCTACACTATTACCAAATCCAGGGAGAGTTGGACAGAGGAAGAACACGACAAGTTTCTCGAAGCTCTTCAGCTATTTGACAGAgattggaaaaaaattgaagattttgtAGCTTCAAAAACAGTTATTCAGATCCGAAGCCATGCCCAGAAGTACTTTTTGAAAGTTCAGAAGAATGGAACAGTAGCGCATGTGCCTCCTCCGCGCCCTAAGCGCAAAGCTACTCATCCTTACCCACAAAAGGCATCGAAAAATGTTTTGGTGCCACTGGCAGCATCCATGGCTTATACTTCTTCAACGACTATCCTTGCACCTGGATATACCACATGGGATGAAGCTTCCTTGCTGATGAATACTGGACCAAACAAACCTGTGCCCTGTCAGGATGAATTCAACAATCTTCATGGAACTGAAGCTGATATTGGATCAATGGGGATGGCAAGAATCAGCAACAACAGTCTTAGTGGTGTTGCTAGCTCTAGTAGAACGCCACCTAGTTCTGAGATGCAAAAGCAAGGGAAACGAGCTCCAGTTCTTCATGGTTTACCAGACTTTGCCGAGGTTTATAGCTTCATTGGAAATGTTTTTGATCCAAATACAAAAGACCATGTCCTGAAGCTGAAAGAAATGGATCCTATAAACTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACTTGTCAAGCCCTGACTTTGACCGCgttAGGAAGGTGCTATCATCATATGATGTTAACACCAAGACGGTAGGAGTTTCTGTAGGAATTGATGTCAAGAAGCAAATAAACGATCTATCATGCCAAACCGCTTA 863 0.4264 MAASAPTDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVASKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKATHPYPQKASKNVLVPLAASMAYTSSTTILAPGYTTWDEASLLMNTGPNKPVPCQDEFNNLHGTEADIGSMGMARISNNSLSGVASSSRTPPSSEMQKQGKRAPVLHGLPDFAEVYSFIGNVFDPNTKDHVLKLKEMDPINFETVLLLMRNLTVNLSSPDFDRVRKVLSSYDVNTKTVGVSVGIDVKKQINDLSCQTA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02625 287 ProSiteProfiles SANT domain profile. 22 75 IPR017884 -
Bva04g02625 287 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Bva04g02625 287 MobiDBLite consensus disorder prediction 169 186 - -
Bva04g02625 287 PANTHER SWI/SNF COMPLEX-RELATED 2 280 - -
Bva04g02625 287 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Bva04g02625 287 MobiDBLite consensus disorder prediction 169 191 - -
Bva04g02625 287 MobiDBLite consensus disorder prediction 1 23 - -
Bva04g02625 287 SMART sant 23 71 IPR001005 -
Bva04g02625 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Bva04g02625 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Bva04g02625 287 Gene3D - 27 74 - -
Bva04g02625 287 Pfam Myb-like DNA-binding domain 24 69 IPR001005 -
Bva04g02625 287 PANTHER PROTEIN REVEILLE 8 2 280 - -
Bva04g02625 287 CDD SANT 26 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02625 Bva-Chr4 23292455 23296248 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g02625 Myb_DNA-binding 5.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02625 - - gmx:100783482 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02625 04 23292455 23296248 Bva13g01903 13 15489298 15493220 BWGD