Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02621 ATGTTGGATCTTAATCTTAACGTGGGTTCCTCTGATACTGCATCGGATTCCGTCGACATGGTTTCGGCAACGGTTCTACCACCTTCCGGTAGCCAAATGGATAGCTCTGGAAGCTTCAATTCCTCTGTCGTCAATGCCGATACCTCCACCAACACTTATGAGGAAGATTCTTGCTCCTATGGTGGTGCCTTTGCTTTTAGCTTCGGTATACTGAAGAAGAATGCTGCAGATGATGGCCCAAGCTCCGAACCAGTTGAACTTCCCCAAGACGAAGGTGAAGATGGCTGTAATCGGACCATCCAGCTTTTTCCAATGGCCAGAACCGAAGAAGCCCGTGTCACTGAGCTTGGCATGGCTCGGCAGTTTCCTGGTTCGTCCCCAGGTAAGGGGTGGTTGGATTTCTCGTCTAAGGAGGTCGGTAACGCTTTGGAACCGGAGCATGGAATGCTAGCCCAGCAGCAGAGACAGCAGGTGAAGAAGAGCCGGCGGGGACCGAGGTCTCGGAGCTCACAGTATCGTGGTGTTACTTTTTATCGAAGAACGGGAAGATGGGAATCGCATATTTGGGACTGTGGGAAACAGGTGTACTTGGGCGGATTTGATACAGCTCACGCTGCAGCAAGGGCATATGATCGAGCAGCAATCAAGTTCCGTGGTATTGATGCAGATATCAATTTCAACATTAGTGATTATGAGGAAGATATTAAGCAGATGAGTAATTTCACAAAAGAAGAGTTTGTGCATATTCTGCGTCGACAGAGCACGGGTTTCTCAAGGGGGAGCTCGAAGTACAGGGGTGTTACTCTTCATAAATGTGGACGCTGGGAAGCTCGTATGGGGCAGTTTCTAGGGAAAAAGTATATATATCTTGGACTATTCGATAGCGAAATAGACGCTGCAAGGGCGTACGATAAGGCTGCCATAAAATGCAACGGGAGGGAAGCTGTTACAAACTTTGAGTCTAGCTCATATGAAGAGGAGAGAACTTCTCTGGCTGGTAATGAAGATAGCGAGCAGAATCTTGATCTTAACTTGGGTATAGCTCCCCCTGCTGTCGCTGATGTTCAAACGAAGAACATCCACAATGTGAGAGGTTTACAAGTTCAGCGTGGCTGGAATGACATGCATATTGGGCACTCGGTATCAAAATCGTTGATGGATCAGTCGTCCCATGGCTTCTCCATAGCTTCTGAGCATCCTTCTGTCTGGAGTGGTACCAATTTCTTTCCCATCTGTCAGGAAATAGCAATAGAGAAGAGGATGGAAGTTGATCCCTTGCCAAATTGGGTTTGGCAAATGCAAGGTCCTTATGGCGCAGAGACATTGATTCCGCCCTTCTCCGCTGCAGCATCATCAGGATTCCCTTCTTCAGCAAGAATATTTCCATCAGCTGCTGATAATCAAATTCACTATCCAAACATGACAATCCTCCACCCCTG 1439 0.4774 MLDLNLNVGSSDTASDSVDMVSATVLPPSGSQMDSSGSFNSSVVNADTSTNTYEEDSCSYGGAFAFSFGILKKNAADDGPSSEPVELPQDEGEDGCNRTIQLFPMARTEEARVTELGMARQFPGSSPGKGWLDFSSKEVGNALEPEHGMLAQQQRQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNISDYEEDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIDAARAYDKAAIKCNGREAVTNFESSSYEEERTSLADSEQNLDLNLGIAPPAVADVQTKNIHNVRGLQVQRGWNDMHIGHSVSKSLMDQSSHGFSIASEHPSVWSGTNFFPICQEIAIEKRMEVDPLPNWVWQMQGPYGAETLIPPFSAAASSGFPSSARIFPSAADNQIHYPNMTILHP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02621 476 CDD AP2 262 322 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 SMART rav1_2 263 326 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 SMART rav1_2 171 233 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 SUPERFAMILY DNA-binding domain 170 229 IPR016177 GO:0003677
Bva04g02621 476 ProSiteProfiles AP2/ERF domain profile. 263 320 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 473 - -
Bva04g02621 476 SUPERFAMILY DNA-binding domain 262 321 IPR016177 GO:0003677
Bva04g02621 476 ProSiteProfiles AP2/ERF domain profile. 171 227 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 MobiDBLite consensus disorder prediction 76 95 - -
Bva04g02621 476 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 Pfam AP2 domain 262 312 IPR001471 GO:0003700|GO:0006355
Bva04g02621 476 Gene3D AP2/ERF domain 170 229 IPR036955 GO:0003700|GO:0006355
Bva04g02621 476 Gene3D AP2/ERF domain 262 321 IPR036955 GO:0003700|GO:0006355
Bva04g02621 476 MobiDBLite consensus disorder prediction 149 172 - -
Bva04g02621 476 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 473 - -
Bva04g02621 476 CDD AP2 171 229 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02621 Bva-Chr4 23280676 23284008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02621 156 343 AP2-EREBP Transcription Factor Family AT4G36920 80.412 2.03e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bva04g02621 AP2 6.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02621 K09284 - gmx:100797238 538.495