Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02617 ATGGCTGAAGGGCCGGCGAGTCCAGGCGGCGGTAGCCACGAGAGCGGTGAGCAGAGTCCTCGCTCTAATATCCGTGAACAGGATAGGTTCTTGCCGATCGCCAATATCAGCCGGATCATGAAGAAGGCGCTTCCTGCTAATGGAAAAATCGCAAAGGATGCCAAGGAGACCGTACAAGAATGCGTCTCTGAGTTCATCAGCTTTATCACCAGCGAGGCGAGTGATAAATGtcagagagagaagaggaagacGATTAACGGTGATGATTTACTTTGGGCAATGGCAACTCTAGGATTTGAGGAGTATATTGATCCCCTGAAAATTTACCTGAGCAGATATAGAGAGATGGAGGGTGATACCAAGGGTTCAGCCAAGGGTGGAGATGCATCCGCTAAGAAAGACATTCAATCAAGTTCCAATGCTCAGCTTGCCCATCAAGGTTCTTTTTCTCAAGGCGTTACTTACCCAAACACTCAGCCTCAGGCCCAACATATGATGGTTCCTATGCAAGGCCCGGAGTA 521 0.4722 MAEGPASPGGGSHESGEQSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEEYIDPLKIYLSRYREMEGDTKGSAKGGDASAKKDIQSSSNAQLAHQGSFSQGVTYPNTQPQAQHMMVPMQGPE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02617 173 MobiDBLite consensus disorder prediction 132 165 - -
Bva04g02617 173 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bva04g02617 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Bva04g02617 173 MobiDBLite consensus disorder prediction 119 173 - -
Bva04g02617 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bva04g02617 173 SUPERFAMILY Histone-fold 27 149 IPR009072 GO:0046982
Bva04g02617 173 MobiDBLite consensus disorder prediction 1 27 - -
Bva04g02617 173 Gene3D Histone, subunit A 18 152 IPR009072 GO:0046982
Bva04g02617 173 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Bva04g02617 173 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Bva04g02617 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Bva04g02617 173 PANTHER BNAA04G21250D PROTEIN 1 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02617 Bva-Chr4 23249414 23253187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02617 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.778 4.64e-91 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Bva04g02617 CBFD_NFYB_HMF 7.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02617 K08065 - gmx:100820170 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02617 04 23249414 23253187 Bva13g01909 13 15522644 15532876 BWGD