LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g02613	ATGGGGAAGACAAGAGGTATGGGAGCTGCCCGCAAGTTGAAGTCCCACCGCAGGAGGCAACGGTGGGCAGATAAGTCATACAAAAAATCTCACCTTGGCAATGAATGGAAGAAACCATTTGCTGGATCATCCCATGCCAAGGGTATCGTTCTTGAGAAAATtGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGCGCCAGGGTTCAACTCATTAAAAATGGGAAGAAAATTGCTGCATTTGTGCCCAATGATGGTTGCTTAAATTACATTGAGGAAAATGATGAAGTCTTGATAGCTGGATTTGGACGTAAGGGTCATGCCGTCGGTGATATTCCTGGTGTCAGATTCAAGGTTGTGAAGGTTTCTGGTGTCTCCCTACTTGCTCTTTTCAaggagaaaaaggagaagCCAAGATCTTA	428	0.4369	MGKTRGMGAARKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS	142

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g02613	142	PANTHER	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	1	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Bva04g02613	142	MobiDBLite	consensus disorder prediction	1	30	-	-
	Bva04g02613	142	SUPERFAMILY	Nucleic acid-binding proteins	20	140	IPR012340	-
	Bva04g02613	142	Gene3D	-	25	142	IPR012340	-
	Bva04g02613	142	PIRSF	RPS12p_RPS12a_RPS23e_RPS12o	16	142	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Bva04g02613	142	TIGRFAM	uS12_E_A: ribosomal protein uS12	6	141	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Bva04g02613	142	Pfam	Ribosomal protein S12/S23	31	141	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Bva04g02613	142	CDD	Ribosomal_S23	26	139	IPR005680	GO:0003735\|GO:0006412\|GO:0015935
	Bva04g02613	142	MobiDBLite	consensus disorder prediction	9	25	-	-
	Bva04g02613	142	ProSitePatterns	Ribosomal protein S12 signature.	59	66	IPR006032	GO:0003735\|GO:0005840\|GO:0006412
	Bva04g02613	142	PANTHER	BNACNNG03140D PROTEIN	1	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g02613	Bva-Chr4	23225122	23226844	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva04g02613	1	142	Cytoplasmic Ribosomal Protein Gene Family	AT5G02960	95.775	2.17e-96	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g02613	K02973		-	fve:101303309	286.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva04g02613	04	23225122	23226844	Bva03g02430	03	20673522	20675800	ECH
	Bva04g02613	04	23225122	23226844	Bva09g00205	09	1039826	1047890	ECH
	Bva04g02613	04	23225122	23226844	Bva04g02613	04	23225122	23226844	ECH
	Bva04g02613	04	23225122	23226844	Bva07g02441	07	19701844	19702505	ECH