Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02612 ATGGCCACTGATACGTCGTTTTTGTTCGCTGGCATTCGTTTTGATAGAAAGAGATTCGGCGGCGATATTGCCAGGTTTGAGaaaaaagagagtgaTGATTCTGTGAATATTTCGAGCTTAGTTGAGGCTGAGAAAGCAGAACCAGTAGAAGGGAAATCGCCTGTCAAGAAGAGGAAGCGGAAGGGAGCTGTTTCTGaaacagtTGAAGGAttcaatgttttcaaaaaatcaaaatcagctGCACAAACAGGAAATCAATCAAAAGATGGAGACCTGGCTGAAAATGAGTCCATCAAACGGAAGAAGGAACAGAATAGGCAACTTGAGCGGGATGCTCTCTTCAGGAAAAAGCACAACATTCATGTATCTGGATATAATGTCCCATCGccacttcaaaattttgaggaGTTGAACTCAAGATATGGATGTGACTCATGTTTGACACGCAATCTGGCTGACCTTGGGTTCAGAGAACCAACACCCATCCAACGTCAAGCTATTCCAATTCTTTTATCTGATCGCGAGTGCTTTGCTTGTGCCCCTACTGGCTCTGGAAAAACCTTGGCGTTTGTGTGTCCAATGCTTATGAAGCTTAAGTCTCCAGCAAGTGATGGTATTCGAGCTGTTATCGTTTGTCATACTCGTGAATTATCTGCTCAGACATATAGAGAGTGTAAAAAGCTGgctaaaggaaagaaatttcgTATCAAGTTGATGACAAAACAGCTTTCAAGGAATgctgatttttcaaaatttccatgTGACGTACTTATATCCACACCACTTCGATTACGCCGGGCCATCCGGAGGAAAAAGGTTGATCTGAGCAGGGTTCAATATCTTGTCTTGGATGAATCTGACAAGCTCTTTGAGCCTGTATTGTTCAAGCAGattgattttataatcaaaGCATGCTCAAATCCCTCAATAATACGTTCATTGTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGTGCACGAGAACTTATGCATGACGCTGTTAGAGTCATTGTTGGCAGAAAGAATATGGCATCTGAAACGATCAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAGCTTTTGGCAATTCGTCAGAGCTTTGCAGAGAGTCTAAACCCTcccgttttggtctttgtcCAAAGCAAGGAGCGAGCACAGGAACTCTATGATGAACTTGCATTTGACAACATTAGAGTTGGTGTCGTCCATTCTGACTTGTCACAGAATGAGCGAGAAGACGCTGTTGATAACTTCAGAGCTGGCAAAACGTGGGTTCTGATTGCTAGTGATGTAGTTGCCCGTGGCATGGATTTTAAAGGCGTGAATTGCGTGATCAACTATGATTTTCCAGATTCTGCCGCTGTATACATCCATAGGATTGGTCGTTCTGGCAGAGCAGGGAGGATCGGAGAAgctattactttttacacggAAGAAGACATCACATTCCTGCGGAATATCGCTAATCTGATGGCAGCGTCAGGTTGTGAAGTTCCCTCGTGGCTCACGGAATTGCGCAAAACGAAGTGGAAGAAACACCGACCCAAAAGAGATTCAATCTCATCCAATCCAAAAGATTA 1589 0.3952 MATDTSFLFAGIRFDRKRFGGDIARFEKKESDDSVNISSLVEAEKAEPVEGKSPVKKRKRKGAVSETVEGFNVFKKSKSAAQTGNQSKDGDLAENESIKRKKEQNRQLERDALFRKKHNIHVSGYNVPSPLQNFEELNSRYGCDSCLTRNLADLGFREPTPIQRQAIPILLSDRECFACAPTGSGKTLAFVCPMLMKLKSPASDGIRAVIVCHTRELSAQTYRECKKLAKGKKFRIKLMTKQLSRNADFSKFPCDVLISTPLRLRRAIRRKKVDLSRVQYLVLDESDKLFEPVLFKQIDFIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAQELYDELAFDNIRVGVVHSDLSQNEREDAVDNFRAGKTWVLIASDVVARGMDFKGVNCVINYDFPDSAAVYIHRIGRSGRAGRIGEAITFYTEEDITFLRNIANLMAASGCEVPSWLTELRKTKWKKHRPKRDSISSNPKD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02612 529 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Bva04g02612 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 337 IPR014001 -
Bva04g02612 529 MobiDBLite consensus disorder prediction 92 106 - -
Bva04g02612 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 490 IPR027417 -
Bva04g02612 529 Pfam DEAD/DEAH box helicase 160 324 IPR011545 GO:0003676|GO:0005524
Bva04g02612 529 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 525 - -
Bva04g02612 529 SMART helicmild6 389 470 IPR001650 -
Bva04g02612 529 MobiDBLite consensus disorder prediction 76 91 - -
Bva04g02612 529 MobiDBLite consensus disorder prediction 29 106 - -
Bva04g02612 529 MobiDBLite consensus disorder prediction 45 65 - -
Bva04g02612 529 CDD SF2_C_DEAD 349 479 - -
Bva04g02612 529 Gene3D - 75 336 IPR027417 -
Bva04g02612 529 CDD DEADc_DDX52 147 340 IPR044764 GO:0003724|GO:0005524|GO:0030490
Bva04g02612 529 Pfam Helicase conserved C-terminal domain 367 470 IPR001650 -
Bva04g02612 529 Gene3D - 337 513 IPR027417 -
Bva04g02612 529 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 525 - -
Bva04g02612 529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 509 IPR001650 -
Bva04g02612 529 SMART ultradead3 155 352 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02612 Bva-Chr4 23220677 23224822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02612 130 508 Eukaryotic Initiation Factors Gene Family AT3G19760 30.446 7.81e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02612 K14779 - gmx:100800969 836.254