Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02595 ATGGGGCATAGACATATATATAGCACATCTCAGTTGTTTGATAGTGAGCATGACCAGAATTGGAATCATATGCACACTGATCAACATTATGTTCACCTAGGTAGAACAAGCACATCGGAGAATGGTTCTTTCATTTATCCAGTGGAGAATATGCCTATGGATGGTATTTCTTTTACACCTCCGTGGAACCCATCTACAAGGCCAAATGGATATCCATCCCCAAGTCTCAACATTGAAGTACCCCCTCATCAATCAGATGCATCTGTTACTTCTCATCAGCATTTTCTACATTCATCAAATGCTGGAGCATTTTTTGCTGTTTCTGGAAATCATACACACCAGCCTTCTTCTTCCAATTTCGACAGACAGCCATTTCACATTGTTGATGGTGGTTTTATTGACCTGACAATGGGAAGTGGAAGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTTTGTGAGAGAGGAAGTACAAGCAGATACTCCAATACTGGAAGTTCAACTGATCTTCCCATATCTTCAGAATTGCGGCAGGAGAAGCCAAGTATAGATTCTCAATATATGCCTTGGGATCATGTTACTATGACACCCACCTTCAGAGGCAATGGCGTTTCAATCAGGGGAGAGGGTTCTTTAAGGAATGTGAGAAGCCGATCTGCACTGGATTTGGAATCCAACTTGGCTAGGACACATCTATCCATCAATCATTCACAGAATTCTCACCCCACTGGTCCACCCATTGATCTTCCTAGCACCGTGGATCTTTCAGGTCCAAGTTCCAGCACTTTGACGAGGGATTGGAGCCAAATGAGCATAGCTCCTGCTCATGGGAGGGTGTTATCATCAGAAACAAGTAGTTTTGGTCATGACACAAGCCACTTCATCGTTGGAAATGGGGCTACTAATGCTACTGCAGATATCGGAGGTTATCATCATGAGATTGGCACAAGCAGAAATTCTACTGTTCCGCAAAGTTTTCATGGTAATGTAACTCAATCTGCTAGGGGAGTTCGCAGTAACTATTCCCAAAGATCTGTTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGGCACCTTCAGATGATGGATTGCGTATTGTAGCTGAAAGTTACTCCTCTAGACATCCAAGGCCATCGACCAGCATTGGCTGGCGTAACAGTGAGAGGAACGGGAGATCAAGGATATATGGTGATAGATATCGATTCGCTGACGAGGTTGGTTTACATGATCGGTTTTCATCTGAGGGTTTCATGATTGTTGATCGCACATCAATTTATGGTTCTAGAAATATGTTGGATCAGCATAGAGAAATGAGGATGGACATAGACAACATGAGCTACGAGGAATTACTTGCACTCGGAGAGAGGATTGGCCATGTCAGCACAGGATTGTCCGAAGACTTGATTTCCAAGTGTGTGACAGAAACAATATATTGTTCATCCGATCAAAATCAGGAGGAAGGAACATGTGTAATCTGCCTGGAAGAGTACAAGAACATGGACGATGTCGGGACTCTGAAAACTTGTGGTCACGACTACCATGTGAGCTGCATTAGGAAGTGGTTATCTATGAAGAACATATGCCCTATCTGCAAAACTTCAGCTTTGGCTGACAATAAGta 1637 0.4362 MGHRHIYSTSQLFDSEHDQNWNHMHTDQHYVHLGRTSTSENGSFIYPVENMPMDGISFTPPWNPSTRPNGYPSPSLNIEVPPHQSDASVTSHQHFLHSSNAGAFFAVSGNHTHQPSSSNFDRQPFHIVDGGFIDLTMGSGRGPHKRKSPGIPSVCERGSTSRYSNTGSSTDLPISSELRQEKPSIDSQYMPWDHVTMTPTFRGNGVSIRGEGSLRNVRSRSALDLESNLARTHLSINHSQNSHPTGPPIDLPSTVDLSGPSSSTLTRDWSQMSIAPAHGRVLSSETSSFGHDTSHFIVGNGATNATADIGGYHHEIGTSRNSTVPQSFHGNVTQSARGVRSNYSQRSVPTFRASSSLRLGHVAPSDDGLRIVAESYSSRHPRPSTSIGWRNSERNGRSRIYGDRYRFADEVGLHDRFSSEGFMIVDRTSIYGSRNMLDQHREMRMDIDNMSYEELLALGERIGHVSTGLSEDLISKCVTETIYCSSDQNQEEGTCVICLEEYKNMDDVGTLKTCGHDYHVSCIRKWLSMKNICPICKTSALADNK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02595 545 SUPERFAMILY RING/U-box 485 540 - -
Bva04g02595 545 SMART ring_2 495 536 IPR001841 -
Bva04g02595 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 541 IPR013083 -
Bva04g02595 545 Pfam Ring finger domain 494 537 IPR001841 -
Bva04g02595 545 MobiDBLite consensus disorder prediction 154 174 - -
Bva04g02595 545 ProSiteProfiles Zinc finger RING-type profile. 495 537 IPR001841 -
Bva04g02595 545 MobiDBLite consensus disorder prediction 137 174 - -
Bva04g02595 545 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 542 - -
Bva04g02595 545 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 542 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02595 Bva-Chr4 23153806 23160595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02595 1 543 C3H Transcription Factor Family AT2G37150 42.315 1.27e-114 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02595 - - gmx:100803627 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02595 04 23153806 23160595 Bva13g01936 13 15662213 15668749 BWGD
Bva04g02595 04 23153806 23160595 Bva04g02595 04 23153806 23160595 ECH