Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02592 ATGCAAATGATTCCTGGTGACCCTTTTTCCCTATCTACTTCGATCGGTGGGTTTGCTCAGTCTCAGAGTCAGCAAcaaaacacaaacacaaaccctaaccctaaacctaaTCCACCTCCtgcaaagaagaagagaaaccTGCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTTTCCCCGAAAGCTCTCATGGCTACGAACCGATTCATTTGCGAAATATGCAACAAAGGGTTTCAGAGAGATCAGAATCTTCAACTTCACCGGAGGGGACACAACCTTCCATGGAAACTTCGGCAAAGGTCCAACAAAGAGGTCGTCAGAAAGAAGGTTTACATCTGCCCGGAGAAGACTTGTGTCCACCATGACCCGGCAAGAGCACTCGGCGACCTTACCGGGATAAAGAAGCATTTCAGCCGCAAACATGGTGAGAAGAAGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCTGTTCAATCTGACTGGAAAGCTCACACCAAAACTTGTGGAACTAGGGAATATAAGTGCGATTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTCATTACACACAGAGCTTTCTGCGATGCCTTAGCTGAAGAGAGTGCGAGGATGACTTCAGTTGCATCCACGAACCTGAATTTCAAGAGTGAAGAGAGTGTGATCAATTCACAGCCTGGTTTGGCGCATGAATATCCCGGCCAGGGATTCCAGAACATGGCTGGTGTACCACAGTTTGGTTTTAATGGAATGGGAATGGGTGGAGAGCACCAAAGGCCAAGCTTGTCTCTATGGTTGAACCAGGGAAATCCCCAGATGAATCCTCTCGATGTGGGACCTAATTCAGGTCTTTACGTGTCGTCGAGTTCTTCTGGTTTGCCTGAGATTGTGCAAATGGGTCAAGCCCATTCCTTTGCCTCCTCTTCATTGTCAAATTTTGGAATACCCCCTTCGAATTCAGCAAACGCTAACCTTTCTCTATCGTCACTTCCCATTGGGAAAAAAGGAGATGCAGGTGGAAATGGAAGTCTCAGCTCCATGTATTCTGAGGGTCAAAACAAACAATCAAAGCCACCTTCCCCCATGTCAGCTACTGCCCTTCTTCAAAAGGCAGCTCAGATGGGTTCTACTAGAAGCAGCAGCAATGCCTCTATGTTCAGTGGCAGCTTTGGAGTAATGTCCTCAACCACAACTCAAGCCAATGCTAGTCTAAATGCTAGTGTCATCCAAGACCAAGCCTTTCAAAATCAAGGAATGAAGCAGCCAGCAGAGAGTTTTGCTTCAAGTGGCAGTACTGCAGCTGGTGCAGCCATGCTTGGAAATGGTAACTTTAGTTCATTGACGCATACGTCGAACAGTTTTGATCAACTCTTGATGCAAAGCAATGGGAAACAAGGTGACCAAGTGCAATTGAAGCTCCATCATTGTTCGAACGCAGTGGAAGATCATGCTTTAACAAGAGATTTTCTAGGAGTGAGTGGCGGGCGCGGAGCTTGCCCACCATTTCTACCCGAAGAGCTAGCTAAGTTCGCTTCCTTAGGCTCCACAATGGGTTTAAGCCAGTTTACTGCCAACCAGTG 1583 0.4593 MQMIPGDPFSLSTSIGGFAQSQSQQQNTNTNPNPKPNPPPAKKKRNLPGTPDPDAEVIALSPKALMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVRKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMTSVASTNLNFKSEESVINSQPGLAHEYPGQGFQNMAGVPQFGFNGMGMGGEHQRPSLSLWLNQGNPQMNPLDVGPNSGLYVSSSSSGLPEIVQMGQAHSFASSSLSNFGIPPSNSANANLSLSSLPIGKKGDAGGNGSLSSMYSEGQNKQSKPPSPMSATALLQKAAQMGSTRSSSNASMFSGSFGVMSSTTTQANASLNASVIQDQAFQNQGMKQPAESFASSGSTAAGAAMLGNGNFSSLTHTSNSFDQLLMQSNGKQGDQVQLKLHHCSNAVEDHALTRDFLGVSGGRGACPPFLPEELAKFASLGSTMGLSQFTANQ 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02592 527 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Bva04g02592 527 MobiDBLite consensus disorder prediction 32 46 - -
Bva04g02592 527 PANTHER ZINC FINGER PROTEIN JACKDAW-LIKE ISOFORM X1 3 519 - -
Bva04g02592 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Bva04g02592 527 MobiDBLite consensus disorder prediction 337 381 - -
Bva04g02592 527 Gene3D Classic Zinc Finger 127 206 - -
Bva04g02592 527 MobiDBLite consensus disorder prediction 343 381 - -
Bva04g02592 527 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Bva04g02592 527 MobiDBLite consensus disorder prediction 1 31 - -
Bva04g02592 527 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Bva04g02592 527 MobiDBLite consensus disorder prediction 1 54 - -
Bva04g02592 527 SMART c2h2final6 148 168 IPR013087 -
Bva04g02592 527 SMART c2h2final6 113 143 IPR013087 -
Bva04g02592 527 SMART c2h2final6 71 93 IPR013087 -
Bva04g02592 527 Gene3D Classic Zinc Finger 51 124 - -
Bva04g02592 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02592 Bva-Chr4 23135830 23138404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02592 1 515 IDZ Gene Family AT5G03150 49.728 4.56e-146 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02592 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02592 K25870 - gmx:100789331 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02592 04 23135830 23138404 Bva13g01939 13 15685537 15688315 BWGD
Bva04g02592 04 23135830 23138404 Bva04g02592 04 23135830 23138404 ECH