Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02588 ATGGCAACCGAAGGGGATGACGTTGCCAAGAGGAACGACGAAGGCGCCAGTACCAGCACCAGTACCAGTAGAGCTGATATTCCAATTCAAAAGGGTGTAGAATCAACTGAAATAACAGAAGAACCTCCAAGTGGACAACATGGGAGAAAGCAAAACCTCATCTTGGAGATACCTCAAAGATCTCTGGAGGAAGCTAGAGAAGAATTTCTAAGAATAAACATGCCTCCAACCCCAACTCCCAGAAGAGTTAATTTTTCCTCCATTCCAAGCCCCagtttcttcaaaatcaatgaatcCTCAGGTCCCacctcattaaaaaataaatcaactaTTAAATCCCTTCTTCCCAAGCTCAGTTTTAAATTTCACAATACTAGTTCAGAGATTGAGAGAGGTGCTATCCTAGCACCTGAAGCTTCACCAATGGTGGCACAGAGAAGGCCTTTTATTTCAAGGACATTGTCTCTAACAAAGGTGATCACCCCCAGAGGGAAGAAAACTTCATCCTTACCAGTAACCCCTATTGCTCACTCAAATCCAGAGTCTGCACACGGAGGAAACTTCGCTTATCCGGCAACATCTGCTaaaaaagagGTGCAATTACCCATTCATCGTTCTCGTTCAGTTCCTCTGCTTAGCAAAGATGGGAACGTACCTGTAGGTGGCATTTTTCGTGTAGTTCCCACCACGCCACGGCTAGCTGAGAAGACTGCGACAACAATATCTACCTCATCTCCATCTGATGATTCTGCTGGGAATGAGGATGACGGGGAAGATATTCCTGAAGAAGAAGCTGTTTGCAGAATCTGTTTGATTGAATTGGGAGAAGGTCCTGATACCCTCAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCGCTGGCACACCAAGAATGCGCTGTCAAATGGTTTAGCATTAAAGgtaataaaatttgtgatatCTGCAAGCAAGAAGTTCAGAACTTACCTGTCACCCTTTTACGAGTCCAAAGTCAGGCTCTTAACTTACAAGGAAGCAGAGCTCGGCAAGCAGAGATTGGTCAATACAGGGTTTGGCAGGATGTCCCCATTCTTGTCATTGTCAGCATGCTGGcttacttttgttttcttgagcAGCTTCTTGTTTCAAATTTGGGATCTGGTGCCATTGCCATatctctcccattttcttgTATATTGGGTCTTCTTGCAAGCATGACATCCACAACAATGGTGACGAGACAGCATGTCTGGGTCTATGCAACTGTCCAGTTTGGTCTGGTGGTTCTCGCTGGGCATCTATTCTACTCATTGCTCCATATGCAAGCTGTTCTATCCATTCTGTTGGCTACATTTTCTGGATTTGGAGCAATGATGTGTGGAACTTCTATTCTTATTGAGATTATGAAATGGAGGAGAATGTGGCTTGCTAGGTTGGATCAACAGCGTGGCTCGCAGGAAGTGACGCAACCTAATCAATCAACTGCAATTACCCAACAAGCTCAAACTCAGAGTGGTTCTCAACATCGCCAAAGTGATATGGGTGATTCAGCTGTACATGGCAGCTG 1544 0.4249 MATEGDDVAKRNDEGASTSTSTSRADIPIQKGVESTEITEEPPSGQHGRKQNLILEIPQRSLEEAREEFLRINMPPTPTPRRVNFSSIPSPSFFKINESSGPTSLKNKSTIKSLLPKLSFKFHNTSSEIERGAILAPEASPMVAQRRPFISRTLSLTKVITPRGKKTSSLPVTPIAHSNPESAHGGNFAYPATSAKKEVQLPIHRSRSVPLLSKDGNVPVGGIFRVVPTTPRLAEKTATTISTSSPSDDSAGNEDDGEDIPEEEAVCRICLIELGEGPDTLKMECSCKGELALAHQECAVKWFSIKGNKICDICKQEVQNLPVTLLRVQSQALNLQGSRARQAEIGQYRVWQDVPILVIVSMLAYFCFLEQLLVSNLGSGAIAISLPFSCILGLLASMTSTTMVTRQHVWVYATVQFGLVVLAGHLFYSLLHMQAVLSILLATFSGFGAMMCGTSILIEIMKWRRMWLARLDQQRGSQEVTQPNQSTAITQQAQTQSGSQHRQSDMGDSAVHGS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02588 514 MobiDBLite consensus disorder prediction 14 29 - -
Bva04g02588 514 MobiDBLite consensus disorder prediction 235 250 - -
Bva04g02588 514 MobiDBLite consensus disorder prediction 1 52 - -
Bva04g02588 514 SUPERFAMILY RING/U-box 263 318 - -
Bva04g02588 514 MobiDBLite consensus disorder prediction 235 259 - -
Bva04g02588 514 SMART ringv_2 266 315 IPR011016 GO:0008270
Bva04g02588 514 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Bva04g02588 514 MobiDBLite consensus disorder prediction 165 185 - -
Bva04g02588 514 MobiDBLite consensus disorder prediction 479 514 - -
Bva04g02588 514 PANTHER OS02G0165000 PROTEIN 3 510 - -
Bva04g02588 514 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Bva04g02588 514 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 3 510 - -
Bva04g02588 514 MobiDBLite consensus disorder prediction 479 507 - -
Bva04g02588 514 CDD RING_CH-C4HC3_MARCH 267 315 - -
Bva04g02588 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 322 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02588 Bva-Chr4 23112889 23117599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02588 253 321 C3H Transcription Factor Family AT2G37950 41.429 3.28e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02588 - - rcu:8284538 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02588 04 23112889 23117599 Bva04g02588 04 23112889 23117599 ECH