Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02581 ATGACAAAGGAGCTTGAGGGTGCAGGAAGCGGTACCGTAACTCATCCCAAGGACTACCACGACCCACCGCCCGCACCGCTCTTCGATCCGGCCGAGCTCTCTAAGTGGTCCTTTTACAGGGCCGTAATTGCCGAGTTCGTTGCCACCCTCTTGTTCTTGTACGTCACTGTCCTCTCCGTCATTGGTTACAAGACCCAGATTGATCCCACACTTAATGGCTCCGAATGCGGCGGCGTTGGCTTTCTCGGCATCGCTTGGGCCTTCGGCGGCATGATCTTCGTTCTCGTCTACTGCACCGCCGGTATATCTGGAGGGCACATAAACCCGGCGGTGACTTTTGGGCTGTTTCTGGCTCGGAAGGTGTCGCTGATTAGAGCTATAGCCTACATGGTGGCTCAGTGCCTGGGAGCCATTTGTGGGTGCGGCCTGGTCAAGGCTTTCCAGAAATCCCATTACAACAGATACGGTGGTGGTGCCAACACGCTTTCGACTGGATACAGCAAAGGCACTGGTTTGGGCGCAGAGATTGTTGGTACTTTTGTTCTTGTCTACACTGTCTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCCCATGTTCCCgtGTTAGCACCACTTCCAATTGGGTTTGCGGTGTTTGTTGTTCACTTGGCTACTATCCCTGTCACCGGCACCGGCATCAATCCGGCTAGAAGCTTCGGAGCTGCAGTCATGTACAACAACGAGAAGGCATGGGATGACCAtTGGATCTTCTGGGTGGGACCCTTCGTCGGCGCTGCCATTGCTGCAATTTACCACCAATACGTGTTGAGAGCCCACGGTGCCAAAGCTCTAGGCTCTTTCAGGAGTTCTTCCCACCTCTA 866 0.5393 MTKELEGAGSGTVTHPKDYHDPPPAPLFDPAELSKWSFYRAVIAEFVATLLFLYVTVLSVIGYKTQIDPTLNGSECGGVGFLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIAYMVAQCLGAICGCGLVKAFQKSHYNRYGGGANTLSTGYSKGTGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPVTGTGINPARSFGAAVMYNNEKAWDDHWIFWVGPFVGAAIAAIYHQYVLRAHGAKALGSFRSSSHL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02581 288 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 TIGRFAM MIP: MIP family channel proteins 44 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Bva04g02581 288 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Bva04g02581 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Bva04g02581 288 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Bva04g02581 288 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02581 288 MobiDBLite consensus disorder prediction 1 23 - -
Bva04g02581 288 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02581 Bva-Chr4 23076548 23078042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02581 1 288 Major Intrinsic Protein MIP AT2G37170 78.472 5.60e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02581 K09872 - rcu:8284532 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02581 04 23076548 23078042 Bva03g01083 03 9962285 9965771 ECH
Bva04g02581 04 23076548 23078042 Bva09g00246 09 1245376 1247055 ECH
Bva04g02581 04 23076548 23078042 Bva04g02581 04 23076548 23078042 ECH
Bva04g02581 04 23076548 23078042 Bva07g02403 07 19502084 19503682 ECH