Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02577 ATGACGGCCAGGCTATCTCCGGTTCTCAAGATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACAATCACTTTGGAGGTGGAGAGTTCCGACACCATCGATAACGTGAAGGCGAAGATTCAGGACAAGGAAGGTATTCCACCAGATCAGCAGCGACTCATCTTTGCTGGTAAACAGCTTGAAGATGGTCGTACTCTTGCCGATTACAACATTCAGAAAGAATCCACGCTTCACCTTGTCCTTCGTCTTCGTGGTGGGGAAATTATGACGCTATG 275 0.4727 MTARLSPVLKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGEIMTL 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02577 91 ProSiteProfiles Ubiquitin domain profile. 11 86 IPR000626 GO:0005515
Bva04g02577 91 CDD Ubl_ubiquitin 11 86 - -
Bva04g02577 91 SUPERFAMILY Ubiquitin-like 10 86 IPR029071 -
Bva04g02577 91 SMART ubq_7 11 82 IPR000626 GO:0005515
Bva04g02577 91 Pfam Ubiquitin family 13 84 IPR000626 GO:0005515
Bva04g02577 91 Gene3D - 8 90 - -
Bva04g02577 91 ProSitePatterns Ubiquitin domain signature. 37 62 IPR019954 -
Bva04g02577 91 PANTHER UBIQUITIN 11 86 - -
Bva04g02577 91 PRINTS Ubiquitin signature 21 41 IPR019956 -
Bva04g02577 91 PRINTS Ubiquitin signature 42 62 IPR019956 -
Bva04g02577 91 PRINTS Ubiquitin signature 63 84 IPR019956 -
Bva04g02577 91 PANTHER - 11 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02577 Bva-Chr4 23063008 23063595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02577 11 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.718 7.63e-52 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02577 - K08770 tua:125520881 157.918