Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02575 ATGATTACGTTTATGGATTCAAAGgagaaattgaaagagataGAGAAGTGTTTGGACCCTCAGCTATGGCATGCCTGCGCCGGCGGCATGGTGCAAATGCCACCGGTGAACGCTAGGGTGTTCTACTTCCCTCAAGGCCACGCTGAGCATGCATGTGGATCTGTGAACTTCAGAACTTGCCCCAGGATTTCACCTTGCGTTCCATGCAGAGTTGCTGCTATAAGATATATGGCTGATCCTGAGACAGACGAGGTGTATGCGAAACTGAGGTTTGTTCCTGTGAATGCTAATCAGGGCAGTTATGACGACGATGGCATTGGAGCAATGAATGGGTCTGAAAGTCAAGATAAACCTGCTTCATTCGCGAAGACATTGACACAGTCCGATGCCAACAATGGCGGTGGATTTTCTGTTCCAAGATATTGTGCAGAGACAATATTTCCTCGTTTAGACTACTCGGCGGATCCCCCCGTTCAGACCATCCTTGCTAAGGATGTTCATGGGGAAACATGGAAATTCAGGCACATTTACCGAGGTACACCAAGGCGGCATCTTTTGACGACTGGTTGGAGTACTTTTGTGAATCAGAAAAAGCTAGTTGCAGGGGATTCAATCGTGTTTCTAAGGGCAGAAAATGGGGATCTGTGTGTTGGGATTCGTCGAGCTAAAAGGGGAATTGGCGGTGGACGTGAGCGTTCATCTGGGTGGAATCCCGATGGGGGAAATTGTCCCTTGTCATATGGAGGATTCTCGGCCTTGCTGAGGGAAGATGATAACAAGTTACTGAGAAATGGTAAGAGCAATTCGAATGAGAGTAATCTAATGGGCAAGGGGAAAGTGAAGCCTGAAGCTGTTATTGAGGCTGTAACTCTTGCCGCAAATGCTCAGCCATTTGAGGTTGTGTACTATCCTCGGGCTAGCCCTCCTGAGTTTTGTGTGAAAGCGTCTTTGGTTAAAGCAGCAATGCAGATTAGGTGGGTTTCTGGAATGAGGTTCAAGATGGCCTTTGAAACTGAGGATTCCTCACGGATAAGTTGGTTTATGGGAACTGTATCTTCAGTTCAGGTTGCTGATCCACATTGCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTTATATGGGATGAGCCAGATTTGCTTCCAAATGTAAAACGGGTGAGCCCGTGGCTGGTTGAATTGGTATCAAGCATGCCTGCTGCAATTCATCTGTCTCCTTTCTCACcaccaaggaagaaattgagatTGCCTGACTACCCATTCCCGGATTTTGGCCCTGATGTCCAAATGCCAATTCCAACATTTCCCAGCAATCTCCAAGGGCCTAGTAACCCCTTTGGCATTCTGCCCGAAAGTACTCCTGCTGGCATGCAGGGAGCCAGGCATGTTCACTATGGTCTACCTTTATCCACAATGCAGTCAAGTCTATTTCCAACCGGTTTCCGGCCGTTTGATCACGCTGCTGCTGCTACACCAACAAGGATCTCCAATAATCCAACATATCAAGACCCCAGCACGAGTGATGTTTCTTGCCTACTTTCCATGGCAAATTCCGGCCACTCTCCAAGGAAACCGGACCATGTCAAGACACAGTCACCACAGCTTGTGCTTTTTGGCCAAACAATACTCACTGAGCCTCAGATATCTCTTAGTTGCTCTGGCGACACAGTCTCCCCAGTTACAGGAAATAGCTCATCTGATGGCAATGCTGATAAAATCACTAATTTTTCTGATGGTTCTGGATCCGCTCTCCATCAACAAGAACGTTCCTCTTGCGACAGGTTCCTGTGGTACAAGGATAATCGCCTAGAAATTCACCCCGACTTGGAGACTGGTCACTGTAAAGTTTTTATGGAATCAGAAAATGTAGGTCGCACGTTGGATCTTTCCTTACTTGCCTCTTACGATGAACTTTATACAAGGTTAGCGGACATGTTTGATATAGACAAATCTGAGATGTTAAGCCATCTTCTTTACCGTGATAAAACAGGGGTCCTCAAACACATCGGAGATGAGCCATTCAGCGACTTTAAGAAAACGGCCAGAAGGTTGACGATTCTAATGGATTCTGGCAGTGACAACGTTggtagagagaaaaaata 2099 0.4593 MITFMDSKEKLKEIEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACGSVNFRTCPRISPCVPCRVAAIRYMADPETDEVYAKLRFVPVNANQGSYDDDGIGAMNGSESQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGRERSSGWNPDGGNCPLSYGGFSALLREDDNKLLRNGKSNSNESNLMGKGKVKPEAVIEAVTLAANAQPFEVVYYPRASPPEFCVKASLVKAAMQIRWVSGMRFKMAFETEDSSRISWFMGTVSSVQVADPHCWPDSPWRLLQVIWDEPDLLPNVKRVSPWLVELVSSMPAAIHLSPFSPPRKKLRLPDYPFPDFGPDVQMPIPTFPSNLQGPSNPFGILPESTPAGMQGARHVHYGLPLSTMQSSLFPTGFRPFDHAAAATPTRISNNPTYQDPSTSDVSCLLSMANSGHSPRKPDHVKTQSPQLVLFGQTILTEPQISLSCSGDTVSPVTGNSSSDGNADKITNFSDGSGSALHQQERSSCDRFLWYKDNRLEIHPDLETGHCKVFMESENVGRTLDLSLLASYDELYTRLADMFDIDKSEMLSHLLYRDKTGVLKHIGDEPFSDFKKTARRLTILMDSGSDNVGREKK 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02575 699 Gene3D - 326 400 - -
Bva04g02575 699 SUPERFAMILY DNA-binding pseudobarrel domain 114 224 IPR015300 -
Bva04g02575 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva04g02575 699 ProSiteProfiles PB1 domain profile. 610 690 IPR000270 GO:0005515
Bva04g02575 699 CDD B3_DNA 120 221 IPR003340 GO:0003677
Bva04g02575 699 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Bva04g02575 699 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Bva04g02575 699 Gene3D - 608 694 - -
Bva04g02575 699 Gene3D - 119 223 IPR015300 -
Bva04g02575 699 MobiDBLite consensus disorder prediction 553 584 - -
Bva04g02575 699 SMART B3_2 121 223 IPR003340 GO:0003677
Bva04g02575 699 Pfam Auxin response factor 288 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva04g02575 699 PANTHER AUXIN RESPONSE FACTOR 6 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02575 Bva-Chr4 23053193 23056707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02575 15 694 B3 DNA Binding Superfamily AT4G30080 57.948 0.0 724
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva04g02575 B3 7.4e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02575 04 23053193 23056707 Bva09g00255 09 1299444 1303059 ECH
Bva04g02575 04 23053193 23056707 Bva04g02575 04 23053193 23056707 ECH
Bva04g02575 04 23053193 23056707 Bva07g02393 07 19431631 19435142 ECH