Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02571 ATGTCTACTTCTGCTGCTTCTGTAGCACTTCCTATTCTCACTTCCAAATCTCAACCGCTCTCGTATTCGAAACAAGCTCTATTGTCTCCCCATTATGCCTCTTCTGTGTCTTTCAGACTTAATTCGAAGCCCATATCTATATCTGCTTCTTTTCTCCACTTGGACGGAGTCTGTCCGAGTTTGTCATCTCGTTTCATCCGCAACGTAACCCTTTCTTCGGAGTTTGACCAAGAAGAGGAAGTCTTAAGTGATGGAGACGAACCCAGTTTCTCCCCGGACCTTAAGCTCTTCGTGGGTAATCTTCCTTTCAGCGTTGATAGTGCCCAGTTGGCTGATTTGTTTGGAAACGCTGGAAATGTAGAGATGGTTGAggtaatttatgataaaaccaCCGGACGAAGCAGGGGATTTGGTTTTGTGACAATGTCATCCACCGAGGAAGTTGAAGCCGCCGCTCAACAATTCAATGGTTATGAACTACATGGAAGGGCATTGAGAGTTAATTATGGACCTCCTCCTCCTCGGAGGGAAAATTCCTCCTTTAGAGGTTCCAGAGGTGGTCCTTTTTCAGACGCTAGGAGGGAAAATTCCTCCTTTAGAGGTTCCAGAGGTGGTCCTGTTTCAGACGCTGGATTCGGAAACCGTGTTCATGTGGGTAATCTTGGATGGGGTGTTGATCACTTGACACTTGAGTCATTGTTTAGGGAGCAAGGGAAGGTTTTGGAAGCAAAGGTAGTCTATGACAGGGAAAGTGGAAGATCAAGGGGCTTTGGATATGTGACTTACACCAGTGCTGAAGAGGTTAACAATGCCATTGAGTCCTTAAACGGTGTGGACTTGGATGGCAGAGCTATTCGAGTGTCATTAGCAGAGCCTAAGCCAAGGCGTCAATTTTG 896 0.4554 MSTSAASVALPILTSKSQPLSYSKQALLSPHYASSVSFRLNSKPISISASFLHLDGVCPSLSSRFIRNVTLSSEFDQEEEVLSDGDEPSFSPDLKLFVGNLPFSVDSAQLADLFGNAGNVEMVEVIYDKTTGRSRGFGFVTMSSTEEVEAAAQQFNGYELHGRALRVNYGPPPPRRENSSFRGSRGGPFSDARRENSSFRGSRGGPVSDAGFGNRVHVGNLGWGVDHLTLESLFREQGKVLEAKVVYDRESGRSRGFGYVTYTSAEEVNNAIESLNGVDLDGRAIRVSLAEPKPRRQF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02571 298 SUPERFAMILY RNA-binding domain, RBD 89 203 IPR035979 GO:0003676
Bva04g02571 298 Gene3D - 209 298 IPR012677 -
Bva04g02571 298 Gene3D - 68 208 IPR012677 -
Bva04g02571 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 166 IPR000504 GO:0003723
Bva04g02571 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 286 IPR000504 GO:0003723
Bva04g02571 298 MobiDBLite consensus disorder prediction 164 206 - -
Bva04g02571 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Bva04g02571 298 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 298 - -
Bva04g02571 298 CDD RRM_HP0827_like 95 168 - -
Bva04g02571 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 292 IPR000504 GO:0003723
Bva04g02571 298 SUPERFAMILY RNA-binding domain, RBD 214 297 IPR035979 GO:0003676
Bva04g02571 298 PANTHER OS02G0815200 PROTEIN 1 298 - -
Bva04g02571 298 SMART rrm1_1 215 288 IPR000504 GO:0003723
Bva04g02571 298 SMART rrm1_1 95 168 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02571 Bva-Chr4 23023363 23025656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02571 96 297 Eukaryotic Initiation Factors Gene Family AT4G34110 32.673 1.29e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02571 - - jre:109008641 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02571 04 23023363 23025656 Bva04g02571 04 23023363 23025656 ECH