Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02569 ATGGAAACAGTGACCAGCAACATCAATGGCTACCACCATGGCTCGGCTGAGAGCTTCTGCTTGACTGGTGCCAATGGTGGTGCAGCGGCAGACCCGTTGAATTGGGGCGCGGCGGCTGAGTCGCTCAAAGGCAGCCATTTGGACGAGGTGAAGCGCATGGTGGCTGAGTACCAGAAGCCGGTGGTGCGGCTCGGAGGCGAGACACTGACGATTTCGCAGGTTGCTGCCATAGCCACACATGACAAAGGCGTTAAGGTTGAGCTGTCGGAGTCGGCTAGAGCCGGCGTTAAGGCCAGCAGTGATTGGGTCATGAATAGCATGAACAACGGTACTGACAGCTATGGTGTCACCACTGGCTTTGGTGCAACATCACACAGGAGAACCAAACAAGGTGCTGCTCTCCAAAAGGAGCTCATTCGGTTTTTGAATGCTGGAATATTTGGCAACGGAACGGAAACATGTCACACTCTGCCCCACACAGCAACCAGAGCAGCCATGCTCGTTAGAATCAACACTCTCCTCCAAGGTTACTCTGGGATTAGATTTGAGATCCTAGAAGCAATCACAAAGCTCATCAACAACAACGTCACCCCGTGCTTGCCACTTCGTGGCACCATAACAGCTTCTGGTGATCTTGTTCCTCTTTCTTACATCGCCGGTTTGCTAACTGGCCGACCAAATTCCAAAGCTGTTGGACCCTCCGGAGAAATCCTCAATGCCCAGGAAGCTTTCCAAAAGGCCGGAATCGAATCTGATTTCTTTGAATTGCAGCCCAAGGAAGGGCTTGCTCTTGTTAATGGCACTGCTGTTGGTTCTGCTTTGGCCTCCATGGTTCTTTTCGAGGCCAACATCTTAGCTGTGCTGTCAGAAGTTCTATCGGCGATTTTCGCTGAAGTGATGCAAGGGAAGCCCGAATTCACTGACCATTTGACACATAAATTGAAGCACCATCCTGGGCAAATTGAAGCTGCCGCTATTATGGAACACATTTTGGATGGAAGCTCCTATATTAAAGCTGCTGAGAAGTTGCATGAGTTGGATCCATTGCAGAAGCCTAAACAGGATCGCTATGCTCTTCGAACTTCACCGCAATGGCTTGGCCCTCAGATTGAAGTGATCCGATTTGCAACGAAATCGattgagagagagataaaCTCTGTGAATGATAACCCTTTGATTGATGTTTCGAGGAATAAGGCTTTGCACGGTGGCAACTTCCAGGGAACCCCAATTGGTGTCTCAATGGACAATACTCGTTTGGCTCTTGCTTCGATTGGCAAACTCATGTTTGCCCAATTCTCTGAGCTTGTCAATGATTTCTACAACAATGGGTTGCCATCGAATCTTACTGCCAGCAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAGATTGCCATGGCATCTTACTGCTCCGAGCTCCAATACCTTGCAAACCCAGTTACAAGCCATGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCCCGAAAAACAAAGGAAGCTGTTGAGATCCTGCAGCTCATGTCTTCCACATTCTTGATTGCGCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACAGTGAAGAACACCGTCAGCCAAGTTGCAAAGAGAACACTCACTACAGGTGTCAACGGAGAACTCCACCCTTCTAGATTTGCAGAGAAAGATTTGCTCAAAGTGGTTGACAGAGAGTATGTATTTGCCTATGCCGATGACCCCTGCAGCGCCACCTACCCATTGATGCAAAAACTGAGGCACATTCTCGTGGACCATGCTTTAGTCAAtggagaaaatgagaaaaattccAACACATCCATCTTCCACAAGATTACAACTTTCGAGGAAGAATTGAAGTCTCTATTGCCAAAGGAAATTGAAGGTGTAAGATTGGCATACGATAATGGAAACTCTGCAATTCCAAACAAGATTAAGGAATGCAGGTCTTACCCATTGTACAAGTTTGTCAGAGAGGAACTGGGAACTGCGTTGCTGACAGGAGAGAAGGTGAGGTCCCCAGGCGAGGAGTGTGACAAAGTGTTCACAGCGATGTGCCAGGGTAAGATTATTGATCCTCTGCTGGAATGCCTTGGGGAGTGGAACGGTGCACCTCTTCCAATCTGCTA 2168 0.4756 METVTSNINGYHHGSAESFCLTGANGGAAADPLNWGAAAESLKGSHLDEVKRMVAEYQKPVVRLGGETLTISQVAAIATHDKGVKVELSESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGIFGNGTETCHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAQEAFQKAGIESDFFELQPKEGLALVNGTAVGSALASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAEKLHELDPLQKPKQDRYALRTSPQWLGPQIEVIRFATKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTKEAVEILQLMSSTFLIALCQAIDLRHLEENLKNTVKNTVSQVAKRTLTTGVNGELHPSRFAEKDLLKVVDREYVFAYADDPCSATYPLMQKLRHILVDHALVNGENEKNSNTSIFHKITTFEEELKSLLPKEIEGVRLAYDNGNSAIPNKIKECRSYPLYKFVREELGTALLTGEKVRSPGEECDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02569 722 Pfam Aromatic amino acid lyase 69 545 IPR001106 -
Bva04g02569 722 PANTHER HISTIDINE AMMONIA-LYASE 25 722 IPR001106 -
Bva04g02569 722 Gene3D Fumarase/aspartase (Central domain) 269 717 - -
Bva04g02569 722 Gene3D - 535 656 IPR023144 -
Bva04g02569 722 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 31 711 IPR005922 GO:0005737|GO:0006559|GO:0016841
Bva04g02569 722 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 25 722 - -
Bva04g02569 722 CDD PAL-HAL 67 532 IPR001106 -
Bva04g02569 722 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 204 220 IPR022313 GO:0016841
Bva04g02569 722 SUPERFAMILY L-aspartase-like 31 722 IPR008948 GO:0003824
Bva04g02569 722 Gene3D - 23 268 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02569 Bva-Chr4 23003465 23006913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02569 29 722 Monolignol Biosynthesis Gene Families AT2G37040 85.591 0.0 1266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02569 K10775 - gmx:100811101 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02569 04 23003465 23006913 Bva03g01115 03 10453975 10458187 ECH
Bva04g02569 04 23003465 23006913 Bva04g02569 04 23003465 23006913 ECH