Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02563 ATGGATTGTGATGAACACATGCGGAGGTGTTCCATCAAGAAATGCCAAAGGGTTCAGGTGGATGAATCATTTGTTCCTGCTCTTCAAGATGATCTAATGGAAGTCGAGCATTTACTTGCAGAACCTAGAAATGATCATGTTTCAGTGGATGGTGTCTGGTATTTTCATGAGCAGAATCTTGGAAAATGCTATGACATTGGAAACCTTCCCTGTGGGTTTGAGTTTGgtctaaaatcaaatattgGTGGTGGATTGGATTCTCCTAAAACTCAGGATGCAAAAGATGATTTGAAACTTGAGGTCCTTGATGGATTGTTGGAAGATGTAAAAATTGATGGTCTTCAGGCAACAGATGCTTTCTCCAATGCATGCGAAGATTATCTTTTGGATTTCGAATTCACTGACAAAGCTTGTGGACTAGAATCCGGTACTTATGGACAACCAGTAACGGGAAACTCAAGTTCTGAGAGTCATTCTCCAGGATTAAGTGGGAGTAGCATCTGTGTTGGTGGGATATCAGAATCAAGGAAACAGCCCATTGCTCAATCTGAATGTAGTAATGATTCTCTTGATATGAAAGTAACATGTCACTTAGATGATGCCTTCAGGAACAATCCCTGTCTACAATCAAATGGAGATTATATGCACCATAATCCACTCGACATACAGAATCTAAATGAGTTAGACAATGATCGCCCTTTAACAGGCTCTATATCATCTCATGAGAATGAGATGGTTTCTGTTGAAGCATGCCAAACTGCTGCACTTAGGGAGAAGAGATTCCGCAGGCCTACTCAGAGGtatattgaagaattttcaaatttgaggtcaaaagaaaaggtttgCACTGCTGCGACCAAGAATAAACAATCGATTGTAAAGTCGCATAATGACCATCATATAAGGCTCAAAGCATTGAGAAAGACTCCAGGTGAAAAGTCTATTTGTGGAACTAGCGATGTGGCACTTCCTCAGTTGCGGATCCACAACAGACGCCTGAAGAAAGAGGAGCTTGAGTATGACGAGGAGCCTTTTGCATCCGAGTCTGAGTATGAATTCATCACAACAAAAAGATCTAGAAAGAATGACCGTAGGAAGCATCAGAGGATGTGGACTCTCTCTGAAGTGAACAAGTTGGTCGATGGCATTTCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGGTTCTGTTTTCTTCTACCAGTTATCGTACACCCATCGATCTCAGGGACAAATGGCGGAATCTCTTAAGAGCTAGTTGTGCACTAAAATTTAACAAGAGGGAGACTGGGAAGCAGGAGCATGCCTTGCGTCCGTTACCCATCGCTGTACTACGTCGTGTCCGTGAACTGGCTGATATTCACCCCTACCCCAGGGAACGCTCCTCAAAGAAATCATGCATTGGCCAAGTTGGCTCTTTATCGCTTCCTTCTCAAAGTAAAAGCACTCCCATTAGTCATAGCAAAAGAAATGTACGTAGGAATAAATGTACTTA 1499 0.4096 MDCDEHMRRCSIKKCQRVQVDESFVPALQDDLMEVEHLLAEPRNDHVSVDGVWYFHEQNLGKCYDIGNLPCGFEFGLKSNIGGGLDSPKTQDAKDDLKLEVLDGLLEDVKIDGLQATDAFSNACEDYLLDFEFTDKACGLESGTYGQPVTGNSSSESHSPGLSGSSICVGGISESRKQPIAQSECSNDSLDMKVTCHLDDAFRNNPCLQSNGDYMHHNPLDIQNLNELDNDRPLTGSISSHENEMVSVEACQTAALREKRFRRPTQRYIEEFSNLRSKEKVCTAATKNKQSIVKSHNDHHIRLKALRKTPGEKSICGTSDVALPQLRIHNRRLKKEELEYDEEPFASESEYEFITTKRSRKNDRRKHQRMWTLSEVNKLVDGISEYGVGRWTDIKRVLFSSTSYRTPIDLRDKWRNLLRASCALKFNKRETGKQEHALRPLPIAVLRRVRELADIHPYPRERSSKKSCIGQVGSLSLPSQSKSTPISHSKRNVRRNKCT 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02563 499 Pfam Myb-like DNA-binding domain 371 418 IPR001005 -
Bva04g02563 499 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 496 - -
Bva04g02563 499 ProSiteProfiles Myb-like domain profile. 363 418 IPR001005 -
Bva04g02563 499 SMART sant 367 420 IPR001005 -
Bva04g02563 499 CDD SANT_TRF 369 419 - -
Bva04g02563 499 Gene3D - 356 468 - -
Bva04g02563 499 SUPERFAMILY Homeodomain-like 365 420 IPR009057 -
Bva04g02563 499 MobiDBLite consensus disorder prediction 474 499 - -
Bva04g02563 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 363 422 IPR017930 -
Bva04g02563 499 PANTHER TRF-LIKE 8 8 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02563 Bva-Chr4 22982233 22987022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02563 371 417 Single Myb Histone (SMH) Gene Family AT1G17520 44.898 4.84e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bva04g02563 Myb_DNA-binding 4.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02563 - - aprc:113871152 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02563 04 22982233 22987022 Bva04g02563 04 22982233 22987022 ECH