Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02560 ATGGGATCAGGGCTATCTATTTATACTGCAGTCCAATCATTTGCAATGAAGTGTTTCCCGTTCCACTATggagagaagaaggaagaacaGAAGAGCATGCAGTCAATTTCGGTTCTCTCGAACAGTTCTACATATCCTGTGGGTGATATAGGAAAATCTGGTtcagaattaaattctcaaggtGCCTCAGACATCAGCACAGACTCCCTTAGGGGGACTTCATTTCCCAGTTTGTCTCAAAGACCTAGCAACCTGAGAGTTTTTACAGTATCTGAACTGAAATCAGCCACAAAAAACTTCAGTCGCTCTGTTATGATTGGAGAGGGTGGGTTTGGGTGCGTTTACAAAGGATTGATCAAGAGTGTAGAGGAACCGTCCAGAAGAATTGAAATTGCAGTCAAACAACTTGGTAGAAGAGGAGTGCAGGGTCACAAGGAATGGGTGACAGAAGTGAATGTTCTGGGCATTGTCGAGCATCCCAATCTTGTAAAACTAGTGGGATACTGTGCGGATAATGATGAAAGAGGAATCCAGCGGCTtcttatttatgaatatatgcCAAACAGGAGCGTGGAACACCATTTGTCCAAAAGAACAGAGActcctcttccttggtccagGAGATTGAAAATAGCCCAAGATGCAGCTCGTGGATTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTTAGAGACTTCAAATCTTCCAACATTCTTCTGGATGGGGAGTGGAATGCAAAGCTATCAGACTTCGGGTTGGCAAGATTGGGTCCTTCTGAAGGATTAACTCATGTTTCAACAGCGGTTGTAGGAACGTTGGGATATGCTGCTCCTGAATATATTCAAACAGGGCGCCTCACATCAAAAAGTGATGTATGGGGCTATGGCGTCTTCCTCTATGAACTCATCACTGGCAGGCGCCCTATAGACAAAAATCGTCCCAAGGGTGAGCAGAAGCTCTTGCAATGGATAAGACCACACCTATCAGATGGGAAGAAATTTCTACAAATTTTGGATCCAAGGCTTGAGAGGAGAGACATGTTCAAGTCATCTCATAAACTTGCTGCAATAGCTAACCGATGCTTGGTAAAAAACCCGAAGAATCGCCCAAAAATGAGTGAGGTACTGGAAATGATTAATCGGATTGTAGAATCCTCAGCAACGGAAAGTCCACAGCTGTCCTTGACGGATTTGGCATCAACCGAAGCTTCCCAGGACTCTGAAGTAAAACACAAGAAGAGAATCATGCATCTAAAACTTGCAGAAAATAATTGGTTTCTTAAGATTTGGAGAAGAAAGCAAGTAAGGACAAGTTG 1322 0.4077 MGSGLSIYTAVQSFAMKCFPFHYGEKKEEQKSMQSISVLSNSSTYPVGDIGKSGSELNSQGASDISTDSLRGTSFPSLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYKGLIKSVEEPSRRIEIAVKQLGRRGVQGHKEWVTEVNVLGIVEHPNLVKLVGYCADNDERGIQRLLIYEYMPNRSVEHHLSKRTETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDGEWNAKLSDFGLARLGPSEGLTHVSTAVVGTLGYAAPEYIQTGRLTSKSDVWGYGVFLYELITGRRPIDKNRPKGEQKLLQWIRPHLSDGKKFLQILDPRLERRDMFKSSHKLAAIANRCLVKNPKNRPKMSEVLEMINRIVESSATESPQLSLTDLASTEASQDSEVKHKKRIMHLKLAENNWFLKIWRRKQVRTS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02560 440 ProSitePatterns Protein kinases ATP-binding region signature. 106 134 IPR017441 GO:0005524
Bva04g02560 440 CDD STKc_IRAK 106 384 - -
Bva04g02560 440 Gene3D Transferase(Phosphotransferase) domain 1 186 406 - -
Bva04g02560 440 SUPERFAMILY Protein kinase-like (PK-like) 75 381 IPR011009 -
Bva04g02560 440 Gene3D Phosphorylase Kinase; domain 1 80 185 - -
Bva04g02560 440 Pfam Protein tyrosine and serine/threonine kinase 105 380 IPR001245 GO:0004672|GO:0006468
Bva04g02560 440 PANTHER OS01G0588500 PROTEIN-RELATED 21 434 - -
Bva04g02560 440 ProSiteProfiles Protein kinase domain profile. 100 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g02560 440 PANTHER KINASE 1B 21 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02560 Bva-Chr4 22964528 22967945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02560 86 381 Glycoside Hydrolase AT3G07070 49.664 2.02e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Bva04g02560 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02560 - - gsj:114400704 671.389