Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02541 ATGTCACAAGAATCCGAGGAGATAAAGACGACTGAGCAGTGGAGATGGTCCGAAATGCAAGGCCTTGAGCTGGTTTCTGCTGCTCCTCCTATTTCTGAGCCATATAAAACTAACCCATCAACACCAACAGCCGAAGACACAGGCTCGAAGGCAGAGGACCCTGCTCAAGAGGGTGCGACCAAACAAGAGCCAAGAGAAATGGAAGGCTATGAACCAAAGAAAGATGGCAGCGCCGGCGGTGGTGCCCCTAATGGCACTAGTAGTAGCGGGGAGAAGCCTGAGACTGTTGGCTCTGTTGGCTTCGGCGAGCTTTTCAGATTTGCTGATGGCCTGGATTACATTCTCATGGCAATTGGAACTGCCGGAGCAATTGTACATGGCTGTTCTTTGCCACTGTTTCTTCGGTTCTTCGCTGATCTTGTAAATTCATTTGGGTCGAATGCCAATAATTTGGACAAGATGACACAAGAAGTTGTCAAGTACGCATTTTACTTCCTGGTGGTGGGTGCTGCTATATGGGCATCCTCGTGGGCTGAGATTTCCTGCTGGATGTGGACAGGGGAGCGGCAATCGACGAAGATAAGGATCAAGTACCTTGAAGCTGCTTTGAACCAGGACATCCAGTATTTTGACACCGAGGTTCGAACATCCGATGTCGTTTATGCCATTAACAGTGATGCTGTGATGGTCCAAGACGCCATTAGCGAGAAGCTCGGTAATTTCATTCACTACATGGCAACATTTGTTTCTGGATTCATCGTGGGTTTCACTGCTGTTTGGCAATTAGCTTTAGTCACTCTCGCTGTAGTCCCTATGATAGCTGTAATAGGAGCCATTCATACCACCACTTTGGCCAAGCTCTCTGGTAAAAGCCAGGAAGCTCTTTCTCAAGCTGGGAACATCGTGGAACAGACGGTTGTGCAAATTCGAGTGGTAATGGCTTTCGTTGGAGAGTCCAGAGCATTGCAAGCCTACTCATCAGCCTTGAAGATAGCCCAGAAACTTGGCTACAAAAGTGGGTTTGCAAAGGGAATGGGATTGGGCGCGACCTACTTTGTCGTTTTCTGTTGTTATGCGCTTCTGCTATGGTACGGTGGTTACCTTGTTAGGCACCACTACACTAATGGAGGACTTGCCATTGCCACCATGTTTGCTGTCATGATTGGTGGACTGGGGTTGGGGCAATCTGCGCCGAGCATAGCTGCATTCACAAAGGCCAGAGTTGCAGCTGCGAAAATTTTCCGTATAATTGATCACAAGCCAAGTGTAGACCGAAACAGTGAATCAGGGTTGGAATTAGACACAATAACAGGGCTAGTGGAGTTGAAAAACGTAGACTTTGCCTACCCATCAAGGCCAGAGGTACGGATCCTCAGTAATTTCTCCTTAAATGTGCCCGCCGGCAAGACCATTGCTTTGGTCGGCAGCAGCGGCTCCGGCAAGAGCACCGTCGTCTCTCTTATCGAGAGATTCTACGATCCAACTTCAGGACAAGTTCTGTTAGATGGGCATGACATTAAAACCTTGAAGCTTAAATGGCTGAGGCAACAAATAGGACTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACAACAATCagagaaaatatattgttgGGTAGGCCTGATGCTGACCAAGTTGAGATTGAAGAAGCTGCCAGAGTAGCTAATGCTCACTCGTTCATCATTAAGCTTCCCGAAGGCTATGAAACCCAGGTGGGAGAGAGAGGGCTACAACTATCAGGAGGGCAAAAGCAGAGGATAGCAATTGCAAGGGCTATGCTGAAAAACCCAGCAATCCTTCTCCTTGATGAAGCAACAAGTGCATTAGACTCTGAGTCAGAAAAGCTGGTGCAAGAAGCCCTTGACAGGTTCATGATTGGGAGAACTACTCTTGTAATTGCTCATCGCCTCTCCACTATCCGCAAAGCTGATCTTGTAGCAGTACTTCAGCAAGGAAGTGTTACAGAAATTGGAACTCATGATGAGCTCTATGCTAAAGGTGAAAATGGAGTCTATTCCAAGCTTATCCGAATGCAGGAGATGGCACATGAAACTGCTCTGAATAATGCCAGAAAGAGTAGTGCAAGACCATCAAGTGCCAGAAACTCTGTAAGCTCACCAATAATTGCTCGGAATTCTTCTTATGGGCGATCACCATACTCACGCAGGCTGTCTGACTTTTCCACTTCTGATTTTAGTCTGTCCCTTGATGCAAGCTATCCAAATTATCGACTTGAAAAGCTTGCCTTTAAAGAGCAAGCCAGTTCCTTCTGGCGCCTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCATTGGTTGGTTCCATAGGGTCTGTTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTTATGAGCGTCTACTACAATCCTGACCACAGATACATGATCCGACAAATAGAAAAGTACTGCTACTTGTTGATTGGGCTTTCTTCAGCTGCACTTCTCTTCAATACACTTCAGCACTTCTTCTGGGATATTGTGGGAGAAAATCTTACCAAGAGAGTGAGGGAGAAAATGTTGATTGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGGGAGTGCTAGGATTGCTGCAAGGCTTGCTCTTGATGCCAACAATGTCAGATCAGCCATCGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGTACTGCAGGGTTTGTTTTGCAGTGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTCCCCGTTGTTGTTGCAGCAACTGTTTTACAGAAAATGTTCATGACTGGCTTCTCTGGAGACTTAGAAGCAGCTCATGCCAAGGCAACTCAACTAGCAGGGGAGGCTATTGCCAATGTAAGAACAGTTGCAGCCTTTAACTCAGAAACCAAGATTGTTGGTCTTTTCACCTCCAACCTGGAAATCCCACTACGGCGTTGCTTTTGGAAGGGACAAATTTCTGGAAGTGGATTCGGAATAGCCCAGTTTGCACTTTATGCTTCCTATGCCCTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCATGGGATATCTGATTTCTCTAAAACCATCAGAGTTTTTATGGTGCTCATGGTTTCTGCCAATGGTGCTGCTGAAACTCTAACTCTGGCTCCTGACTTCATCAAGGGAGGTCGAGCCATGAGGTCAGTCTTTGATCTCCTTGACCGAAGAACTGAAATTGAGCCTGATGATCCAGATGCCACCCCAGTCCCTGATCGTCTGCGTGGAGAAGTTGAACTCAAGCATGTAGATTTCTCTTACCCTACTCGTCCAGACATGCCAGTTTTTCGTGACCTTAGTCTTCGCGCTAGAGCAGGCAAGACTCTTGCCCTTGTAGGGCCTAGTGGCTGTGGTAAGAGTTCAGTCATTGCACTTATACAGAGATTTTATGATCCTACCTCTGGGAGGGTTATGATTGATGGAAAGGACATTAGAAAATACAATCTCAAATCCCTCAGAAAGCACATTGCAATTGTACCTCAGGAGCCCTGCCTCTTTGCTGCAACTATTTATGAAAACATCGCTTATGGACATGACTCTGCAACTGAAGCTGAGATAGTTGAAGCAGCAACTCTTGCCAATGCCCACAAGTTCATTTCTGGTTTGCCAGATGGATACAAAACGTTTGTTGGGGAGAGAGGAGTTCAACTTTCTGGAGGACAAAAGCAAAGAATAGCCATTGCTAGAGCCTTTGTGAGAAAGGCAGAGCTTATGCTTCTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAGATCTGTTCAGGAGGCTCTAGACAGTGCCTGCTCAGGAAAAACAACCATCATTGTTGCACACAGACTCTCAACAATTAGGAATGCCAATCTCATCGCTGTAATTGATGATGGGAAAGTGGCAGAGCAAGGATCTCACTCACAGCTATTGAAAAATCACCCTGATGGGATCTATGCACGCATGATTCAATTACAAAGATTCCCGAACACCCAAGCCATTGGAATGACCTCGGGTTCAACTTCTTCAGCAAGACCAAAAGATGGTAATGAAAGAGAAGTCTA 4088 0.4611 MSQESEEIKTTEQWRWSEMQGLELVSAAPPISEPYKTNPSTPTAEDTGSKAEDPAQEGATKQEPREMEGYEPKKDGSAGGGAPNGTSSSGEKPETVGSVGFGELFRFADGLDYILMAIGTAGAIVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKIRIKYLEAALNQDIQYFDTEVRTSDVVYAINSDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSGKSQEALSQAGNIVEQTVVQIRVVMAFVGESRALQAYSSALKIAQKLGYKSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSIAAFTKARVAAAKIFRIIDHKPSVDRNSESGLELDTITGLVELKNVDFAYPSRPEVRILSNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPEGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVTEIGTHDELYAKGENGVYSKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASYPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALVGSIGSVVCGSLSAFFAYVLSAVMSVYYNPDHRYMIRQIEKYCYLLIGLSSAALLFNTLQHFFWDIVGENLTKRVREKMLIAVLKNEMAWFDQEENGSARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTSNLEIPLRRCFWKGQISGSGFGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRKHIAIVPQEPCLFAATIYENIAYGHDSATEAEIVEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDSACSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFPNTQAIGMTSGSTSSARPKDGNEREV 1362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02541 1362 Pfam ABC transporter 1114 1262 IPR003439 GO:0005524
Bva04g02541 1362 Pfam ABC transporter transmembrane region 776 1042 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g02541 1362 Pfam ABC transporter transmembrane region 117 389 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g02541 1362 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 440 676 IPR003439 GO:0005524
Bva04g02541 1362 CDD ABC_MTABC3_MDL1_MDL2 1095 1334 - -
Bva04g02541 1362 Gene3D - 1086 1340 IPR027417 -
Bva04g02541 1362 MobiDBLite consensus disorder prediction 1339 1362 - -
Bva04g02541 1362 CDD ABC_MTABC3_MDL1_MDL2 440 679 - -
Bva04g02541 1362 SMART AAA_5 467 653 IPR003593 -
Bva04g02541 1362 SMART AAA_5 1122 1314 IPR003593 -
Bva04g02541 1362 ProSitePatterns ABC transporters family signature. 1234 1248 IPR017871 GO:0005524
Bva04g02541 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1086 1334 IPR027417 -
Bva04g02541 1362 CDD ABC_6TM_Pgp_ABCB1_D2_like 761 1077 - -
Bva04g02541 1362 SUPERFAMILY ABC transporter transmembrane region 104 424 IPR036640 GO:0005524|GO:0016021
Bva04g02541 1362 Gene3D - 438 703 IPR027417 -
Bva04g02541 1362 Gene3D ABC transporter type 1, transmembrane domain 163 1068 IPR036640 GO:0005524|GO:0016021
Bva04g02541 1362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 679 IPR027417 -
Bva04g02541 1362 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1095 1331 IPR003439 GO:0005524
Bva04g02541 1362 MobiDBLite consensus disorder prediction 1 94 - -
Bva04g02541 1362 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 116 1338 - -
Bva04g02541 1362 MobiDBLite consensus disorder prediction 33 47 - -
Bva04g02541 1362 MobiDBLite consensus disorder prediction 50 73 - -
Bva04g02541 1362 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 116 1338 IPR039421 -
Bva04g02541 1362 Pfam ABC transporter 458 607 IPR003439 GO:0005524
Bva04g02541 1362 CDD ABC_6TM_Pgp_ABCB1_D1_like 116 413 - -
Bva04g02541 1362 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 772 1059 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g02541 1362 ProSitePatterns ABC transporters family signature. 579 593 IPR017871 GO:0005524
Bva04g02541 1362 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 117 405 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Bva04g02541 1362 SUPERFAMILY ABC transporter transmembrane region 759 1082 IPR036640 GO:0005524|GO:0016021
Bva04g02541 1362 MobiDBLite consensus disorder prediction 1339 1353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02541 Bva-Chr4 22871635 22878126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02541 79 1356 Calmodulin-binding Proteins AT2G36910 88.134 0.0 2312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02541 04 22871635 22878126 Bva04g02541 04 22871635 22878126 ECH