Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02540 ATGATGAAATCCTTCGACCCCAAGAATCTAACCTATTCATCGCCCAGGCCACCCATTCAACTTCCCACTGAACGTTACCTCTCGCTCACTACCTTCCTTTTCCGaagttcttcttcttttgctcACACTCTCGCTCTCGTCGATGCCGATTCTGGCGAGTCTTTCACCTTCCAACAGCTCCATATCCATGTCGCCAAACTCGCCTACGCCTTGTTACATATCGGGATCAACAAAGGGGATATCGTTTTCATATTTGCACCCAATTCAATACACTACATCGTATGCTTCCTCGCCGTCGCCGCCATTGGCGCCATCGCCACGACCTGCAATCCGTTATACACTTTCTACGAGCTTTCAAAACAAGTCCAAGATTCTAATCCAAAGATCGCCATTACAGTACCAGAATTTTTCGAAAAAATTGAACCACTGAATTTACCTTCCATAATCTTAGGCCCTTCAAAATCTACAAGCGATTCAAAGTCGAAAATTTGGCACTACGCGGATTTGATCGGAATGTTCAATGGAATCTCAAATTTGCCGGTGGAGAACACTGTTATGCAATCTGACGTAGCGGCAATTTTGTACTCATCAGGCACGACGGGGAGAAGCAAGGGAGTGATTCTGACGCATGGGAATTTCATCTCACAATCATTAATGGGAACGGACGATCAAGATCGAAACGGTGAAAGCCAGAATGTGTTCCTCTGTTTCTTGCCGATGTTCCATGTGTTTGGGCTTGCAATAATTTCGTACTCGCAACTGCGGAGAGGGAACACGGTGGTGTCGATGAAGAAGTTCGAGTTAAAGAAGGCTTTGGAGGCGGTGGAGAAGTTCAATGTTACTTACTTGTATGTTGCTCCGCCGGTTATGGTAGAGCTGCTGAAGCAGAGTGATGTAGTCAACAAGTATGACTTATCGTCATTGAAGCAGGTCGCGGGGGGCGCCGCCCCTTTGGGCAAAGATGTCATGCAAGATTGTGCTAAAATTCTTCCCAAGGTTGAAATCATTCAggGCTATGGCATGACAGAAGCTTGTGGAGTTATTTCTTTAGAGAATCCAAAGGAAGGATGCCGTCTTACAGGTTCAGCTGGAATCCTACTTCGAGGCATAGAATCCCGAATTGTTAGTTTGGATACTGGGGAGCCCCTTCCCCCCAATCAGTCAGGGGAAATTTGGATTCGAGGGCCTACGGTGATGCAAGGTTATTTTAACAATCCAGAAGCAACTAAGCTGACAATAGATAATGACGGTTGGATGCATACGGGAGATCTTGGATATTTTGACCAAGAGGGACAGCTATATTTGGTAGATCGAATTAAAGAGCTCATAAAGTGTAGTGGATTTCAGGTGGCACCGGCAGAACTTGAAGACTTGCTTGTTTCTCACCCTGAAATATCAGATGCTGGTGTGATACCATCCCCTGATACCAAAGCTGGAGAAGTTCCAGTTGCTTATGTCGTTCGCTCCTCAAACAGCTCTCTAACTGAAGAAGAGATCAAAAAGTTTATAGCAGAACAGGTTGCTCCATACAAAAGGTTGCGACGAGTAACTTTCATAGAGAAGATTCCAAAGTCAGCCACAGGAAAGATATTAAGAAAAGACCTGATGAAAATTGATCAACAAATTACGTCAAAGCTGTA 1640 0.4439 MMKSFDPKNLTYSSPRPPIQLPTERYLSLTTFLFRSSSSFAHTLALVDADSGESFTFQQLHIHVAKLAYALLHIGINKGDIVFIFAPNSIHYIVCFLAVAAIGAIATTCNPLYTFYELSKQVQDSNPKIAITVPEFFEKIEPLNLPSIILGPSKSTSDSKSKIWHYADLIGMFNGISNLPVENTVMQSDVAAILYSSGTTGRSKGVILTHGNFISQSLMGTDDQDRNGESQNVFLCFLPMFHVFGLAIISYSQLRRGNTVVSMKKFELKKALEAVEKFNVTYLYVAPPVMVELLKQSDVVNKYDLSSLKQVAGGAAPLGKDVMQDCAKILPKVEIIQGYGMTEACGVISLENPKEGCRLTGSAGILLRGIESRIVSLDTGEPLPPNQSGEIWIRGPTVMQGYFNNPEATKLTIDNDGWMHTGDLGYFDQEGQLYLVDRIKELIKCSGFQVAPAELEDLLVSHPEISDAGVIPSPDTKAGEVPVAYVVRSSNSSLTEEEIKKFIAEQVAPYKRLRRVTFIEKIPKSATGKILRKDLMKIDQQITSKL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02540 546 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Bva04g02540 546 Gene3D - 11 440 IPR042099 -
Bva04g02540 546 CDD 4CL 21 535 - -
Bva04g02540 546 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Bva04g02540 546 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 538 - -
Bva04g02540 546 Pfam AMP-binding enzyme 38 445 IPR000873 -
Bva04g02540 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 538 - -
Bva04g02540 546 Gene3D - 441 544 IPR045851 -
Bva04g02540 546 SUPERFAMILY Acetyl-CoA synthetase-like 22 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02540 Bva-Chr4 22859071 22863181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02540 1 546 Monolignol Biosynthesis Gene Families AT4G05160 59.165 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02540 K01904 - qsu:112025709 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02540 04 22859071 22863181 Bva03g02226 03 19461383 19463520 ECH
Bva04g02540 04 22859071 22863181 Bva04g02540 04 22859071 22863181 ECH