Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02538 ATGGGTAGAGCTCCTTGCTGCGACAAGACCAATGTAAAGAGAGGGCCATGGTCCCCTGAAGAAGATGCAAAGCTGAAAGAGTACATAGAGAAACATGGGACTGGAGGAAATTGGATTGCTCTTCCCCAGAAAGCTGGCTTGAAAAGATGTGGGAAAAGCTGCAGATTAAGATGGCTTAACTATCTTAGACCCAACATTAAACACGGAGAGTTCTCTGAGGATGAAGATAGGATAATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCAGCTCAATTACCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACTAAGCTCAAGCGAAAATTTATGTGCTTCATGTCAATTCACTCAGCTCAGAAGAAAGCTCGCCAAGCTAACCTTTTGACTATTCTTCAAAGTTCTTCTTTTCCATCCTCGTCATTATCTTCACCATTATCATTCGGTACCAACTCTTACTACACCCCTCATGGGTCCTTCACCGATTCTATTTCCTATTCGACAAGCATCTTGAGTGGCAattcttctgcttctgctaACTCTATTTTCCAAACTCACCGAGAAAGTTTCATGGATCCCATGCAAAATTATCAAGTGAAAGATGGCGTTTTGATGTTTGGGGGTGAAGCTAGTTGCAGCTCTTCCGATGGGAGCTGCAGTAATCAGATCAATCATGTCAAAGAAACAGAGCAAAGCAATGGAACTTTCGTCGAACAGGTAGGGGTCCATCATTACCTCTACAGCACTGGTGGGGTAGAAGAAGAAACCCAGAAGTTTATGCTTACCAGTGCTGGCAGCGTTAGTGGATGGACAGAGAAACAAAATGGATTGTGGGCAGAAAATCCATTAGATTATGGCctagaagaaattaaacagcTAATTAGCACTAATAATTGCAACAGCAAATCctttttgtttgatgaaaaCAAGGCGGAGGGAAGAGTGGTGCACTACTG 977 0.4125 MGRAPCCDKTNVKRGPWSPEEDAKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSEDEDRIICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKFMCFMSIHSAQKKARQANLLTILQSSSFPSSSLSSPLSFGTNSYYTPHGSFTDSISYSTSILSGNSSASANSIFQTHRESFMDPMQNYQVKDGVLMFGGEASCSSSDGSCSNQINHVKETEQSNGTFVEQVGVHHYLYSTGGVEEETQKFMLTSAGSVSGWTEKQNGLWAENPLDYGLEEIKQLISTNNCNSKSFLFDENKAEGRVVHY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02538 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bva04g02538 325 Gene3D - 7 68 - -
Bva04g02538 325 PANTHER TRANSCRIPTION FACTOR RAX3 1 308 - -
Bva04g02538 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bva04g02538 325 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bva04g02538 325 PANTHER OS09G0431300 PROTEIN 1 308 - -
Bva04g02538 325 CDD SANT 16 62 IPR001005 -
Bva04g02538 325 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bva04g02538 325 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bva04g02538 325 CDD SANT 70 113 IPR001005 -
Bva04g02538 325 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bva04g02538 325 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bva04g02538 325 Gene3D - 69 137 - -
Bva04g02538 325 SMART sant 13 64 IPR001005 -
Bva04g02538 325 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02538 Bva-Chr4 22851188 22853014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02538 1 118 MYB Transcription Factor Family AT5G57620 87.288 1.57e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g02538 Myb_DNA-binding 6.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02538 K09422 - pop:18100146 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02538 04 22851188 22853014 Bva13g01995 13 16015023 16016872 BWGD
Bva04g02538 04 22851188 22853014 Bva04g02538 04 22851188 22853014 ECH