Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02533 ATGGCGGATCCACATGCAAACCGCTTCTACGAGGATTTGCCGCCGGAACAAGCAGATagtgaagaagaagacgaTGAAGATGACGAGGAAGAGGATGAGGAGGACGAAGTGGATAGTTTGGATGAAGATTACGCTGCATATATGGAGTCGGTTAGGGCTTTAACCTCTAATCAACCAGgtactattattattgatgACGAATCAGATGATTTTGTAGAAGAAGAGGTAAACAAACGGCGGAGAACCGAAGGAGGGGAGGCGTGCTCGTCTTTAGGAATCGAGAGCTCCGACAGTAGTCAAGGGTATGAGTGGAACCGCAGTGACATTGACGGCCTCTTTTGCCCAATTTGCATGGAACCTTGGACCGATGGCGGTGAACATCATATCTGTTGTCTTCCCTGTGGACATATATATGGTATGTCTTGCATCCAAAGATGGCTTCAACAGCGAAAAAATTCCCGGAAGTGTCCGCAATGCAATAGGAAATGTGCATTGAAAGATGTGAGGAAACTATATGCTTCACGATTAATTGCTGTTGATGAAGAATCACAGAAgAAAATTCGGTCGCTTGAGGCTAAATGTGCTACTCTTGAAAGCAAGGCTTCTGATTGGCGCAAGAAAGAAGCTGATTGTCGTAAGAGAGAAGCTGAGTCACTTCTTAAAATTCAGGATCTTACAGAGAGAACTACTTGTTTAGAGCAGCAGTTACAACATGTGCTGGAGAGACAATCTGAATCTgAGCACAACTTTGGATCTAAGTTTCACGAACAAGGATCTTGTTGCAATTTTGAATTGCAGAAAATGTTTCGGTTGGAGGGTGCACGTGTATTTGATGTAGATGCAGCTAATCAAATCTTATTAGTTGCACGAAAGCCAAGATGCATAGGTGGGGCATGCTTGCTCACTAAAATGAGCTTGTTATCTCCACATGAGAGTGAGGATATCACACTGCCTCCTGCTACCAATTGTATTAGAGATCTGCACATTTCTCCTTCAAGTAGTAGCCTGGCGCTTTATGCTTCATTAGGGAAGAAACTAGCAGTGTTCAGCATGGAGAGCAACAATGTTGTTGTAACTTATGATCTACAGGCTCCTGCGTGGTCTTGCTCCTGGGATCTCAATAGTTCACATTACATATATGCCGGACTACAGAATGGTTCTGTCTATGTATTTGATATACGACAAACTGCAAGGCCATTGAAATTTGTAAATGGGTTTGCTAGCAACCCTGTTCATACTGTATTATCTCTTTTACAAGATTCTAGTCTTCCTTCTGGTGTTAGAACAATCATATCTGCTTCTGCCATTGGACTGTGTCAATGGAACATTGGTGATGAAGGGCCATTTCTAGTTCCTGAAACAGATAATCAAGGAGTTTGTATATCTCTTGCCAGTTGCCCTAGCAGTGATGACATTATCATTTCCTACCGTCCCAAATTTGACATATCTACGGATGTGCCTCTTTCGCAACCTTTGCTCACTCCTCATGGACGAGGAGTACAAGGCTCCCATGTCCTTTTCAAGAGAGTGGACGATTGTTTTCAAAAGGTGGGTTCCTCATGTGCAAATGTAAATAACATTCGACTCCCGAAATCTGTAATCATAGATACAGGTAACGAGAGCACATTGTTTGCATCCGAAGATGAAGTTACATGTGAATTGGTCTTGCAAGAGTTGCCATCTTTTAGAGTTATTCAGCGGTTTAAATCACCTGATCATGTGCGTGATGTAAAGTACTCGCCTACACTGAGCCATGGGTTACTTGGTTGTTTAACTGAGAGGTCATTGCAGCTTTTTAGTGCCAAGCTCTCGTA 1814 0.4217 MADPHANRFYEDLPPEQADSEEEDDEDDEEEDEEDEVDSLDEDYAAYMESVRALTSNQPGTIIIDDESDDFVEEEVNKRRRTEGGEACSSLGIESSDSSQGYEWNRSDIDGLFCPICMEPWTDGGEHHICCLPCGHIYGMSCIQRWLQQRKNSRKCPQCNRKCALKDVRKLYASRLIAVDEESQKKIRSLEAKCATLESKASDWRKKEADCRKREAESLLKIQDLTERTTCLEQQLQHVLERQSESEHNFGSKFHEQGSCCNFELQKMFRLEGARVFDVDAANQILLVARKPRCIGGACLLTKMSLLSPHESEDITLPPATNCIRDLHISPSSSSLALYASLGKKLAVFSMESNNVVVTYDLQAPAWSCSWDLNSSHYIYAGLQNGSVYVFDIRQTARPLKFVNGFASNPVHTVLSLLQDSSLPSGVRTIISASAIGLCQWNIGDEGPFLVPETDNQGVCISLASCPSSDDIIISYRPKFDISTDVPLSQPLLTPHGRGVQGSHVLFKRVDDCFQKVGSSCANVNNIRLPKSVIIDTGNESTLFASEDEVTCELVLQELPSFRVIQRFKSPDHVRDVKYSPTLSHGLLGCLTERSLQLFSAKLS 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02533 604 SMART ring_2 114 159 IPR001841 -
Bva04g02533 604 Coils Coil 222 242 - -
Bva04g02533 604 SMART WD40_4 310 350 IPR001680 GO:0005515
Bva04g02533 604 SMART WD40_4 353 392 IPR001680 GO:0005515
Bva04g02533 604 SMART WD40_4 561 600 IPR001680 GO:0005515
Bva04g02533 604 MobiDBLite consensus disorder prediction 1 15 - -
Bva04g02533 604 ProSiteProfiles Zinc finger RING-type profile. 114 160 IPR001841 -
Bva04g02533 604 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 209 IPR013083 -
Bva04g02533 604 MobiDBLite consensus disorder prediction 1 45 - -
Bva04g02533 604 SUPERFAMILY RING/U-box 104 166 - -
Bva04g02533 604 Coils Coil 23 43 - -
Bva04g02533 604 PANTHER RFWD3 PROTEIN 19 600 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Bva04g02533 604 SUPERFAMILY WD40 repeat-like 313 470 IPR036322 GO:0005515
Bva04g02533 604 MobiDBLite consensus disorder prediction 16 43 - -
Bva04g02533 604 Pfam Ring finger domain 114 160 IPR001841 -
Bva04g02533 604 Coils Coil 180 207 - -
Bva04g02533 604 CDD mRING-C3HGC3_RFWD3 110 160 - -
Bva04g02533 604 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 19 600 - -
Bva04g02533 604 Gene3D - 273 482 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02533 Bva-Chr4 22824377 22829965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02533 113 208 C3H Transcription Factor Family AT4G01270 29.204 8.70e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02533 K15691 - jre:109007435 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02533 04 22824377 22829965 Bva04g02533 04 22824377 22829965 ECH