Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02526 ATGGATTCTCGGATGTCAGCCAGTGGAATTTCTCATCGGGACCACGAGTCTCAGTCGGAACTGGGATATGCTCATTACGGgTGCTCGCATTATAAGAGGAGATGTAAGATTCTAGCACCTTGTTGCGATAAAGTTTTCGATTGCAGACATTGCCATAATGAATCTCAGAACTCGATTGAAGTGGACCCTGTTAATCGCCATGACATTCCTCGTCATGATTTGAAGAGAATCATCTGTTCCTTGTGTAGCACAGAGCAAGATGTTCAACAGATGTGCATTAACTGTGGTGTTTGCATGGGAAATTACTTCTGCTCCAAGTGCAAGTTCTTTGACGATGATGTATCGAAAAAGCAATACCATTGTGATGGGTGTGGAATCTGCAGAACTGGAGGAGAGGAGAACTCTTTCCATTGTAATAAATGTGGATGTTGCTATTCAATGTTAATGAAGGATTCACACCTGTGTGTGGAAAAAGCAATGCATCACAATTGCCCTGTCTGCTTTGAGTTTCTTTTCGATACAACAAAGGACATTACTGTAATGCCATGTGGTCACACTATACATTTGGGTTGTGTGAGAGAAATGGAGCGGCATTATCAgTATTCATGCCCTGTTTGCTCAAAATCATTTTGTGATATGTCTCGCGTGTGGGAGAGATTGGACCAGGAGGTTGCATCAACACCTATGCctgaaatttatcaaaataagatGGTTTGGATTCTCTGTAATGACTGTGGGGAAACATCTGAGGTAAACTTTCACGTTGTGGCGCACAAGTGCCTTAAATGCAAATCCTACAATACAAGACAGACACAAGGTGGGCCTGCGTCATGCTCGTCAAGGATTGAAGAGATGGTGAGATG 863 0.4206 MDSRMSASGISHRDHESQSELGYAHYGCSHYKRRCKILAPCCDKVFDCRHCHNESQNSIEVDPVNRHDIPRHDLKRIICSLCSTEQDVQQMCINCGVCMGNYFCSKCKFFDDDVSKKQYHCDGCGICRTGGEENSFHCNKCGCCYSMLMKDSHLCVEKAMHHNCPVCFEFLFDTTKDITVMPCGHTIHLGCVREMERHYQYSCPVCSKSFCDMSRVWERLDQEVASTPMPEIYQNKMVWILCNDCGETSEVNFHVVAHKCLKCKSYNTRQTQGGPASCSSRIEEMVR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02526 287 Pfam Zinc-ribbon 211 269 IPR039512 -
Bva04g02526 287 SMART ring_2 164 206 IPR001841 -
Bva04g02526 287 Gene3D - 235 278 - -
Bva04g02526 287 ProSiteProfiles Zinc finger CHY-type profile. 21 97 IPR008913 GO:0008270
Bva04g02526 287 Pfam CHY zinc finger 28 109 IPR008913 GO:0008270
Bva04g02526 287 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Bva04g02526 287 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Bva04g02526 287 SUPERFAMILY CHY zinc finger-like 25 99 IPR037274 GO:0008270
Bva04g02526 287 ProSiteProfiles Zinc finger RING-type profile. 164 207 IPR001841 -
Bva04g02526 287 SUPERFAMILY RING/U-box 162 213 - -
Bva04g02526 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 227 IPR013083 -
Bva04g02526 287 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 286 - -
Bva04g02526 287 Pfam Ring finger domain 163 206 IPR001841 -
Bva04g02526 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02526 Bva-Chr4 22792387 22795049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02526 11 280 C2H2 Transcription Factor Family AT3G18290 38.989 2.98e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02526 K10144 - zju:107431972 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02526 04 22792387 22795049 Bva04g02526 04 22792387 22795049 ECH