Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02525 ATGCCGATCCGTAATATCGCCGTCGGTAGGCCAGAGGAGGCCACTCACCCGGACACCTTGAAGGCCGGGCTGGCCGAGTTCATCTCCACTCTTATCTTCGTCTTCGCCGGCTCAGGCTCGGGCATGGCCTTCAACAAACTCACCAACGACGGTGCCACCACCCCTGCAGGCCTCATCTCTGCCGCGATCGCCCATGCATTCGCTCTTTTCGTCGCCGTTGCCGTCGCCGCCAACATCTCCGGCGGCCACGTCAACCCTGCCGTCACCTTCGGTGCTTTCGTCGGTGGTAACATCTCCTTCCTGCGCGGCATCATCTACTGGATCGCTCAGCTCCTTGGCTCCACTGTTGCCTGCTTGCTTCTTAGGTTCGTCACCGGTGGCCTGAGCACCCCAGCGTTCACCCTATCCTCTGGAGTTGGAGTATGGAACGCCGTCGTATTCGAGATCGtgatgacatttggcttggtgtaCACAGTGTACGCCACAGCCGTAGATCCGAAGAGGGGCAGTTTGGGAACTATCGCCCCGATCGCAATTGGCTTCATCGTGGGAGCCAATATTTTGGCGGGAGGTGCATTCGATGGGGCATCCATGAACCCGGCCGTGTCGTTCGGACCTGCTTTGGTGAGCTGGACCTGGACCAACCACTGGGTGTACTGGGTCGGGCCTCTCATTGGCGGTGGTCTCGCGGGCCTTGTCTACGAGTTGTTCTTTATCAGCCATACCCACGAGCAACTCCCCCCCACTGACTACTA 755 0.5801 MPIRNIAVGRPEEATHPDTLKAGLAEFISTLIFVFAGSGSGMAFNKLTNDGATTPAGLISAAIAHAFALFVAVAVAANISGGHVNPAVTFGAFVGGNISFLRGIIYWIAQLLGSTVACLLLRFVTGGLSTPAFTLSSGVGVWNAVVFEIVMTFGLVYTVYATAVDPKRGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWTWTNHWVYWVGPLIGGGLAGLVYELFFISHTHEQLPPTDY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02525 251 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Bva04g02525 251 PANTHER AQUAPORIN-8 1 251 IPR034294 -
Bva04g02525 251 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g02525 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Bva04g02525 251 PANTHER AQUAPORIN TIP1-1 1 251 - -
Bva04g02525 251 SUPERFAMILY Aquaporin-like 12 247 IPR023271 -
Bva04g02525 251 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02525 Bva-Chr4 22789273 22790503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02525 1 251 Major Intrinsic Protein MIP AT2G36830 83.267 1.40e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02525 K09873 - ming:122077045 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02525 04 22789273 22790503 Bva13g02017 13 16120761 16122818 BWGD
Bva04g02525 04 22789273 22790503 Bva04g02525 04 22789273 22790503 ECH