Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02524 ATGGAATCTCAAGTCCAAGAGGAACTAATGGTCTGGAAGGGCAAGCGCACCAAGCGTCAAAGGTTACCCTCTCCACTCCGCTTGGCCACGCCCATGCCTTCGTCAGCTTCATCGAGTGCCGGAAGAATTACCAGTGCTGACAATTCATCAACTTCATCGCCTGAATTGAGGTTGAGGGACAGCACGCAAGAAGAAGAGGACATGGCTAACTGTTTGATTCTTCTTGCTCAAGGCAGCCATCCCCGGAAAGCAACATCGTCATCTGAAGAACCCGTTAACTTTGCTCAACCCCAGAACCGTTACGTGTACCAGTGCAAGACCTGTAACCGTTGCTTCCCTTCATTCCAAGCCCTTGGTGGACACAGAGCCAGCCACAAGAAACCTAAGCCAGAAGAAAAGCTGCAAGCAGTTACTTTTCTCATTAAACAAGAGGATCATGGTCGTCTTTATGACcactccaccaccaccacaaGCACCGACCTTTCCTTGCAATTATCAAGCAGGGCTTTGTATAGAACCAGTATTGCAAATAATAAAGCCAAAGTCCACGAGTGTTCCATTTGTGGGGCTGAGTTCTCATCTGGGCAAGCCTTGGGGGGTCACATGAGGAGGCACAGAACGTTTGCCAATATGCCTGCAACAGCATCTTCGAGCGAAGCCAAGAAGCCCAGAAATGTTTTGAAGTTGGACTTGAATCTGCCGGCACCAGAGGATGATTTGCATGGGGAATCCAAGTTTCCCTTTCAATCCAAGGAAAAAGTTATTGTCTTCTCCGCGTCTTCTCTCGTAGATTGCCATTACTG 803 0.4732 MESQVQEELMVWKGKRTKRQRLPSPLRLATPMPSSASSSAGRITSADNSSTSSPELRLRDSTQEEEDMANCLILLAQGSHPRKATSSSEEPVNFAQPQNRYVYQCKTCNRCFPSFQALGGHRASHKKPKPEEKLQAVTFLIKQEDHGRLYDHSTTTTSTDLSLQLSSRALYRTSIANNKAKVHECSICGAEFSSGQALGGHMRRHRTFANMPATASSSEAKKPRNVLKLDLNLPAPEDDLHGESKFPFQSKEKVIVFSASSLVDCHY 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02524 267 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 10 266 - -
Bva04g02524 267 PANTHER ZINC FINGER PROTEIN ZAT5 10 266 - -
Bva04g02524 267 SUPERFAMILY beta-beta-alpha zinc fingers 102 205 IPR036236 -
Bva04g02524 267 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Bva04g02524 267 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Bva04g02524 267 MobiDBLite consensus disorder prediction 30 57 - -
Bva04g02524 267 MobiDBLite consensus disorder prediction 1 63 - -
Bva04g02524 267 Gene3D Classic Zinc Finger 100 205 - -
Bva04g02524 267 SMART c2h2final6 183 205 IPR013087 -
Bva04g02524 267 SMART c2h2final6 103 125 IPR013087 -
Bva04g02524 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Bva04g02524 267 Pfam C2H2-type zinc finger 182 206 - -
Bva04g02524 267 Pfam C2H2-type zinc finger 102 128 - -
Bva04g02524 267 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 205 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02524 Bva-Chr4 22782216 22783252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02524 9 267 C2H2 Transcription Factor Family AT5G03510 42.708 7.57e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g02524 zf-C2H2_6 3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02524 - - vvi:100252049 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02524 04 22782216 22783252 Bva03g02233 03 19492628 19494113 ECH
Bva04g02524 04 22782216 22783252 Bva09g00307 09 1600802 1602548 ECH
Bva04g02524 04 22782216 22783252 Bva04g02524 04 22782216 22783252 ECH
Bva04g02524 04 22782216 22783252 Bva07g02339 07 19124700 19125987 ECH