Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02520 ATGGATCGAGACTGGGGTTCAAAGCCAGGCAGCGGAGGCGCTGCGTCCGCccaaaatgaagccattgaccgTCGAGAGCGTCTGCGTCGACTCGCCTTGGAGACTATAGATCTTGCTAAAGACCCCTATTTTATGCGCAACCACCTTGGCAGCTATGAATGCAAGCTTTGTCTTACTTTGCATAATAATGAGGGAAATTACTTGGCACACACACAGGGCAAGCGCCATCAGACTAATTTGGCTAAGAGAGCAGCTCGCGAGGCCAAAGAGGCTCCAGCTCAACCTCAGCCCCACAAGCGCAAAGTCTCTCTGCGCAAGTCAGTCAAGATTGGTAGGCCTGGTTATCGAGTAACTAAACAATATGATCCAGAGACAAAGCAGAGATCTCTTCTTTTCCAGATTGAATATCCCGAAATTGAAGACCTCACAAAGCCAAGGCATAGATTCATGTCTTCTTATGAGCAGAGAGTGCAACCCTTTGATAAAAGATATCAGTATCTTTTATTTGCCGCTCAACCATATGAAATCATTGCTTTTAAGGTTCCTAGCACAGAGATTGATAAGTCCACTCCAAAGTTTTTCTCACACTGGGATCCAGATTCAAAGATGTTCACGTTGCAGTTATATTTCAAATCCAAGCCACCAGAGGCAAACAAACCACAGCCTGCCTCTGCGGCTAATGGTACAGCTGCGCCTGGTGTGCCACCAAGGCCTTTGCCTCCCCCACCCCAAGCTCCACCACCACCGCCACCTCCACCACAAGGGTTACCTCCTGTTGGAAACCCTCCGAGAGCACCTCCCCCTCCAATGGCTGGATCATTGCCACTGCCGCCGCCTCCTATGGCAAATGGCCCAAGATCTGTGCCCCCACCCCCTATTGCCAGTGGCACAACAGCTAATTTTATCATGGGCACAAGGCCTCCATTGCCACCTCCACAAGGTTTTCCTGCCCAACAAATGCAGGGTCACCTTGTTCGTCCACCTCCACCGCCACCCAGCATGGGATA 1007 0.4965 MDRDWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSLRKSVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLFAAQPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPASAANGTAAPGVPPRPLPPPPQAPPPPPPPPQGLPPVGNPPRAPPPPMAGSLPLPPPPMANGPRSVPPPPIASGTTANFIMGTRPPLPPPQGFPAQQMQGHLVRPPPPPPSMG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02520 335 MobiDBLite consensus disorder prediction 213 335 - -
Bva04g02520 335 SMART CactinC_cactus_3 89 217 - -
Bva04g02520 335 MobiDBLite consensus disorder prediction 233 292 - -
Bva04g02520 335 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Bva04g02520 335 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g02520 335 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 329 - -
Bva04g02520 335 Gene3D - 94 218 - -
Bva04g02520 335 Gene3D Classic Zinc Finger 46 89 - -
Bva04g02520 335 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bva04g02520 335 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Bva04g02520 335 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Bva04g02520 335 Pfam Zinc-finger of C2H2 type 52 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02520 Bva-Chr4 22767150 22769576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02520 1 228 C2H2 Transcription Factor Family AT2G32600 88.158 1.81e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02520 K12826 - vvi:100245136 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02520 04 22767150 22769576 Bva04g02520 04 22767150 22769576 ECH